Index

_

__init__() (nxtomomill.converter.baseconverter.BaseConverter method) (nxtomomill.converter.edf.checks.OUPUT_CHECK method) (nxtomomill.converter.edf.edfconverter.EDFFileKeys method) (nxtomomill.converter.hdf5.acquisition.baseacquisition.BaseAcquisition method) (nxtomomill.converter.hdf5.acquisition.blisstomoconfig.TomoConfig method) (nxtomomill.converter.hdf5.acquisition.pcotomoacquisition.PCOTomoAcquisition method) (nxtomomill.converter.hdf5.acquisition.standardacquisition.StandardAcquisition method) (nxtomomill.converter.hdf5.acquisition.zseriesacquisition.ZSeriesBaseAcquisition method) (nxtomomill.converter.hdf5.post_processing.dark_flat_copy.ZSeriesDarkFlatCopy method) (nxtomomill.converter.hdf5.utils.H5FileKeys method) (nxtomomill.converter.hdf5.utils.H5ScanTitles method) (nxtomomill.io.acquisitionstep.AcquisitionStep method) (nxtomomill.io.config.configbase.ConfigBase method) (nxtomomill.io.config.configbase.ConfigSourceSection method) (nxtomomill.io.config.confighandler.BaseHDF5ConfigHandler method) (nxtomomill.io.config.confighandler.TomoHDF5ConfigHandler method) (nxtomomill.io.config.dxconfig.DXFileConfiguration method) (nxtomomill.io.config.edfconfig.TomoEDFConfig method) (nxtomomill.io.config.fluoconfig.TomoFluoConfig method) (nxtomomill.io.config.hdf5config.TomoHDF5Config method) (nxtomomill.io.config.optionlevel.OptionLevel method) (nxtomomill.io.framegroup.FrameGroup method) (nxtomomill.io.utils.PathType method) (nxtomomill.settings.Tomo method) (nxtomomill.tests.utils.bliss.MockBlissAcquisition method) (nxtomomill.tests.utils.dxfile.MockDxFile method) (nxtomomill.utils.frameappender.FrameAppender method) (nxtomomill.utils.hdf5.DatasetReader method) (nxtomomill.utils.hdf5.EntryReader method) (nxtomomill.utils.utils.FileExtension method)

A

acq_expo_time_keys (nxtomomill.converter.hdf5.utils.H5FileKeys attribute) ACQ_EXPO_TIME_KEYS (nxtomomill.settings.Tomo.H5 attribute) AcquisitionStep (class in nxtomomill.io.acquisitionstep) add_dark_flat_nx_file() (in module nxtomomill.utils.utils)

add_dark_to_dict() (in module nxtomomill.app.z_concatenate_scans) add_flat_to_dict() (in module nxtomomill.app.z_concatenate_scans) align_titles (nxtomomill.converter.hdf5.utils.H5ScanTitles attribute) ALIGNMENT_TITLES (nxtomomill.settings.Tomo.H5 attribute)

B

BaseAcquisition (class in nxtomomill.converter.hdf5.acquisition.baseacquisition) BaseConverter (class in nxtomomill.converter.baseconverter) BaseHDF5ConfigHandler (class in nxtomomill.io.config.confighandler)

build_configuration() (nxtomomill.io.config.confighandler.BaseHDF5ConfigHandler method) (nxtomomill.io.config.confighandler.TomoHDF5ConfigHandler method) build_edition_to_do() (nxtomomill.converter.hdf5.post_processing.dark_flat_copy.ZSeriesDarkFlatCopy method) build_mapping_to_dark_flat_source() (nxtomomill.converter.hdf5.post_processing.dark_flat_copy.ZSeriesDarkFlatCopy method)

C

calc_hexversion() (in module nxtomomill.version) cast_and_check_array_1D() (in module nxtomomill.utils.nexus) change_image_key_control() (in module nxtomomill.utils.utils) clear_entries_and_subentries() (nxtomomill.io.config.hdf5config.TomoHDF5Config method) clear_titles() (nxtomomill.io.config.hdf5config.TomoHDF5Config method) compare_volumes() (in module nxtomomill.converter.edf.checks) concatenate() (in module nxtomomill.utils.nexus) concatenate_dict() (in module nxtomomill.converter.hdf5.post_processing.dark_flat_copy) ConfigBase (class in nxtomomill.io.config.configbase)

ConfigSourceSection (class in nxtomomill.io.config.configbase) convert_2elmts__tuple_to_float() (in module nxtomomill.app.dxfile2nx) convert_str_to_bool() (in module nxtomomill.io.utils) convert_str_to_frame_grp() (in module nxtomomill.io.utils) convert_str_to_tuple() (in module nxtomomill.io.utils) count() (nxtomomill.converter.edf.edfconverter.EDFFileKeys method) (nxtomomill.converter.hdf5.utils.H5FileKeys method) (nxtomomill.converter.hdf5.utils.H5ScanTitles method) create_nx_data_group() (in module nxtomomill.utils.nexus)

D

dark_names (nxtomomill.converter.edf.edfconverter.EDFFileKeys attribute) DARK_NAMES (nxtomomill.settings.Tomo.EDF attribute) dark_titles (nxtomomill.converter.hdf5.utils.H5ScanTitles attribute) DARK_TITLES (nxtomomill.settings.Tomo.H5 attribute) DatasetReader (class in nxtomomill.utils.hdf5)

deduce_machine_current() (in module nxtomomill.converter.hdf5.acquisition.utils) deprecated() (in module nxtomomill.utils.io) deprecated_warning() (in module nxtomomill.utils.io) diode_keys (nxtomomill.converter.hdf5.utils.H5FileKeys attribute) DIODE_KEYS (nxtomomill.settings.Tomo.H5 attribute) DXFileConfiguration (class in nxtomomill.io.config.dxconfig)

E

edf_to_nx() (in module nxtomomill.converter.edf.edfconverter) EDFFileKeys (class in nxtomomill.converter.edf.edfconverter)

embed_url() (in module nxtomomill.utils.utils) EntryReader (class in nxtomomill.utils.hdf5) extract_darks_flats() (in module nxtomomill.utils.flat_reducer)

F

FileExtension (class in nxtomomill.utils.utils) filter_acqui_frame_type() (in module nxtomomill.io.framegroup) filter_options_level_items() (in module nxtomomill.io.config.optionlevel) filter_str_def() (in module nxtomomill.io.utils) flat_reducer() (in module nxtomomill.utils.flat_reducer) flat_titles (nxtomomill.converter.hdf5.utils.H5ScanTitles attribute) FLAT_TITLES (nxtomomill.settings.Tomo.H5 attribute) FrameAppender (class in nxtomomill.utils.frameappender) FrameGroup (class in nxtomomill.io.framegroup) FrameGroup.Info (class in nxtomomill.io.framegroup) frm_str() (nxtomomill.io.framegroup.FrameGroup static method)

from_data_url_to_virtual_source() (in module nxtomomill.utils.h5pyutils) from_dict() (nxtomomill.io.config.edfconfig.TomoEDFConfig static method) (nxtomomill.io.config.fluoconfig.TomoFluoConfig static method) (nxtomomill.io.config.hdf5config.TomoHDF5Config static method) from_dx_config_to_nx() (in module nxtomomill.converter.dxfile.dxfileconverter) from_dx_to_nx() (in module nxtomomill.converter.dxfile.dxfileconverter) from_edf_to_nx() (in module nxtomomill.converter.edf.edfconverter) from_fluo_to_nx() (in module nxtomomill.converter.fluo.fluoconverter) from_fscan_to_nx() (in module nxtomomill.converter.fscan.fscanconverter) from_h5_to_nx() (in module nxtomomill.converter.hdf5.hdf5converter) from_technique_group() (nxtomomill.converter.hdf5.acquisition.blisstomoconfig.TomoConfig static method) from_virtual_source_to_data_url() (in module nxtomomill.utils.h5pyutils)

G

generate_default_edf_config() (in module nxtomomill.io.config.edfconfig) generate_default_fluo_config() (in module nxtomomill.io.config.fluoconfig) generate_default_h5_config() (in module nxtomomill.io.config.hdf5config) get_arguments() (in module nxtomomill.app.z_concatenate_scans) (in module nxtomomill.app.zstages2nxs) get_axis_scale_types() (nxtomomill.converter.hdf5.acquisition.baseacquisition.BaseAcquisition method) (nxtomomill.converter.hdf5.acquisition.pcotomoacquisition.PCOTomoAcquisition method) (nxtomomill.converter.hdf5.acquisition.standardacquisition.StandardAcquisition method) (nxtomomill.converter.hdf5.acquisition.zseriesacquisition.ZSeriesBaseAcquisition method) get_bliss_tomo_entries() (in module nxtomomill.converter.hdf5.hdf5converter) get_byte_order() (in module nxtomomill.converter.edf.edfconverter) get_data() (in module nxtomomill.utils.nexus) get_data_and_unit() (in module nxtomomill.utils.nexus) get_dataset_name_from_motor() (in module nxtomomill.converter.hdf5.acquisition.baseacquisition)

get_default_output_file() (in module nxtomomill.converter.hdf5.utils) get_entry_type() (in module nxtomomill.converter.hdf5.acquisition.utils) get_expected_nx_tomo() (nxtomomill.converter.hdf5.acquisition.baseacquisition.BaseAcquisition method) (nxtomomill.converter.hdf5.acquisition.pcotomoacquisition.PCOTomoAcquisition method) (nxtomomill.converter.hdf5.acquisition.standardacquisition.StandardAcquisition method) (nxtomomill.converter.hdf5.acquisition.zseriesacquisition.ZSeriesBaseAcquisition method) get_extra_params_default_unit() (nxtomomill.io.config.hdf5config.TomoHDF5Config static method) get_file_name() (in module nxtomomill.utils.utils) get_nx_detectors() (in module nxtomomill.converter.hdf5.acquisition.utils) get_output_file() (in module nxtomomill.app.nxcopy) get_pcotomo_version() (nxtomomill.converter.hdf5.acquisition.pcotomoacquisition.PCOTomoAcquisition method) get_standard_sub_acquisitions() (nxtomomill.converter.hdf5.acquisition.zseriesacquisition.ZSeriesBaseAcquisition method) get_tuple_of_keys_from_cmd() (in module nxtomomill.utils.utils) group_series() (in module nxtomomill.converter.hdf5.acquisition.utils) guess_nx_detector() (in module nxtomomill.converter.hdf5.acquisition.utils)

H

H5FileKeys (class in nxtomomill.converter.hdf5.utils)

H5ScanTitles (class in nxtomomill.converter.hdf5.utils) has_valid_detector() (in module nxtomomill.converter.hdf5.acquisition.utils)

I

index() (nxtomomill.converter.edf.edfconverter.EDFFileKeys method) (nxtomomill.converter.hdf5.utils.H5FileKeys method) (nxtomomill.converter.hdf5.utils.H5ScanTitles method) init_pcotomo_titles (nxtomomill.converter.hdf5.utils.H5ScanTitles attribute) init_titles (nxtomomill.converter.hdf5.utils.H5ScanTitles attribute) INIT_TITLES (nxtomomill.settings.Tomo.H5 attribute) init_zserie_titles (nxtomomill.converter.hdf5.utils.H5ScanTitles attribute) is_different_sequence() (nxtomomill.converter.hdf5.acquisition.baseacquisition.BaseAcquisition method) (nxtomomill.converter.hdf5.acquisition.pcotomoacquisition.PCOTomoAcquisition method) (nxtomomill.converter.hdf5.acquisition.standardacquisition.StandardAcquisition method) (nxtomomill.converter.hdf5.acquisition.zseriesacquisition.ZSeriesBaseAcquisition method)

is_nx_tomo_entry() (in module nxtomomill.utils.utils) is_pcotomo_frm_titles() (in module nxtomomill.converter.hdf5.acquisition.zseriesacquisition) is_url_path() (in module nxtomomill.io.utils) is_using_urls (nxtomomill.io.config.hdf5config.TomoHDF5Config property) is_z_series_frm_titles() (in module nxtomomill.converter.hdf5.acquisition.zseriesacquisition) is_z_series_frm_translation_z() (in module nxtomomill.converter.hdf5.acquisition.zseriesacquisition)

K

known_machine_electric_current (nxtomomill.converter.hdf5.acquisition.pcotomoacquisition.PCOTomoAcquisition property) (nxtomomill.converter.hdf5.acquisition.standardacquisition.StandardAcquisition property)

L

link_nxbeam_to_root() (in module nxtomomill.utils.nexus) list_to_str() (nxtomomill.io.framegroup.FrameGroup static method) load_from_dict() (nxtomomill.io.config.configbase.ConfigBase method) (nxtomomill.io.config.edfconfig.TomoEDFConfig method) (nxtomomill.io.config.fluoconfig.TomoFluoConfig method) (nxtomomill.io.config.hdf5config.TomoHDF5Config method)

M

machine_elec_current_keys (nxtomomill.converter.edf.edfconverter.EDFFileKeys attribute) MACHINE_ELECTRIC_CURRENT (nxtomomill.settings.Tomo.EDF attribute) MACHINE_ELECTRIC_CURRENT_KEYS (nxtomomill.settings.Tomo.H5 attribute) main() (in module nxtomomill.app.dxfile2nx) (in module nxtomomill.app.edf2nx) (in module nxtomomill.app.edf2nx_check) (in module nxtomomill.app.edfconfig) (in module nxtomomill.app.fluo2nx) (in module nxtomomill.app.fluoconfig) (in module nxtomomill.app.fscan2nx) (in module nxtomomill.app.h52nx) (in module nxtomomill.app.h5config) (in module nxtomomill.app.nxcopy) (in module nxtomomill.app.patch_nx) (in module nxtomomill.app.split_nxfile) (in module nxtomomill.app.z_concatenate_scans) (in module nxtomomill.app.zstages2nxs) MockBlissAcquisition (class in nxtomomill.tests.utils.bliss) MockDxFile (class in nxtomomill.tests.utils.dxfile) module nxtomomill nxtomomill.app nxtomomill.app.dxfile2nx nxtomomill.app.edf2nx nxtomomill.app.edf2nx_check nxtomomill.app.edfconfig nxtomomill.app.fluo2nx nxtomomill.app.fluoconfig nxtomomill.app.fscan2nx nxtomomill.app.h52nx nxtomomill.app.h5config nxtomomill.app.nxcopy nxtomomill.app.patch_nx nxtomomill.app.split_nxfile nxtomomill.app.z_concatenate_scans nxtomomill.app.zstages2nxs nxtomomill.converter nxtomomill.converter.baseconverter nxtomomill.converter.dxfile nxtomomill.converter.dxfile.dxfileconverter nxtomomill.converter.edf nxtomomill.converter.edf.checks nxtomomill.converter.edf.edfconverter nxtomomill.converter.fluo nxtomomill.converter.fluo.fluoconverter nxtomomill.converter.fscan nxtomomill.converter.fscan.fscanconverter nxtomomill.converter.hdf5 nxtomomill.converter.hdf5.acquisition nxtomomill.converter.hdf5.acquisition.baseacquisition nxtomomill.converter.hdf5.acquisition.blisstomoconfig nxtomomill.converter.hdf5.acquisition.pcotomoacquisition nxtomomill.converter.hdf5.acquisition.standardacquisition nxtomomill.converter.hdf5.acquisition.utils nxtomomill.converter.hdf5.acquisition.zseriesacquisition nxtomomill.converter.hdf5.hdf5converter nxtomomill.converter.hdf5.post_processing nxtomomill.converter.hdf5.post_processing.dark_flat_copy nxtomomill.converter.hdf5.utils nxtomomill.converter.version nxtomomill.io nxtomomill.io.acquisitionstep nxtomomill.io.config nxtomomill.io.config.configbase nxtomomill.io.config.confighandler nxtomomill.io.config.dxconfig nxtomomill.io.config.edfconfig nxtomomill.io.config.fluoconfig nxtomomill.io.config.hdf5config nxtomomill.io.config.optionlevel nxtomomill.io.framegroup nxtomomill.io.utils nxtomomill.nexus nxtomomill.nexus.nxdetector nxtomomill.nexus.nxinstrument nxtomomill.nexus.nxmonitor nxtomomill.nexus.nxobject nxtomomill.nexus.nxsample nxtomomill.nexus.nxsource nxtomomill.nexus.nxtomo nxtomomill.nexus.nxtransformations nxtomomill.nexus.utils nxtomomill.settings nxtomomill.test nxtomomill.tests nxtomomill.tests.test_version nxtomomill.tests.utils nxtomomill.tests.utils.bliss nxtomomill.tests.utils.dxfile nxtomomill.utils nxtomomill.utils.flat_reducer nxtomomill.utils.frameappender nxtomomill.utils.h5pyutils nxtomomill.utils.hdf5 nxtomomill.utils.io nxtomomill.utils.nexus nxtomomill.utils.utils nxtomomill.version

MOTOR_MNE (nxtomomill.settings.Tomo.EDF attribute) motor_mne_keys (nxtomomill.converter.edf.edfconverter.EDFFileKeys attribute) MOTOR_POS (nxtomomill.settings.Tomo.EDF attribute) motor_pos_keys (nxtomomill.converter.edf.edfconverter.EDFFileKeys attribute)

N

no_master_file (nxtomomill.io.config.hdf5config.TomoHDF5Config property) nxtomomill module nxtomomill.app module nxtomomill.app.dxfile2nx module nxtomomill.app.edf2nx module nxtomomill.app.edf2nx_check module nxtomomill.app.edfconfig module nxtomomill.app.fluo2nx module nxtomomill.app.fluoconfig module nxtomomill.app.fscan2nx module nxtomomill.app.h52nx module nxtomomill.app.h5config module nxtomomill.app.nxcopy module nxtomomill.app.patch_nx module nxtomomill.app.split_nxfile module nxtomomill.app.z_concatenate_scans module nxtomomill.app.zstages2nxs module nxtomomill.converter module nxtomomill.converter.baseconverter module nxtomomill.converter.dxfile module nxtomomill.converter.dxfile.dxfileconverter module nxtomomill.converter.edf module nxtomomill.converter.edf.checks module nxtomomill.converter.edf.edfconverter module nxtomomill.converter.fluo module nxtomomill.converter.fluo.fluoconverter module nxtomomill.converter.fscan module nxtomomill.converter.fscan.fscanconverter module nxtomomill.converter.hdf5 module nxtomomill.converter.hdf5.acquisition module nxtomomill.converter.hdf5.acquisition.baseacquisition module nxtomomill.converter.hdf5.acquisition.blisstomoconfig module nxtomomill.converter.hdf5.acquisition.pcotomoacquisition module nxtomomill.converter.hdf5.acquisition.standardacquisition module nxtomomill.converter.hdf5.acquisition.utils module nxtomomill.converter.hdf5.acquisition.zseriesacquisition module nxtomomill.converter.hdf5.hdf5converter module nxtomomill.converter.hdf5.post_processing module nxtomomill.converter.hdf5.post_processing.dark_flat_copy module nxtomomill.converter.hdf5.utils module

nxtomomill.converter.version module nxtomomill.io module nxtomomill.io.acquisitionstep module nxtomomill.io.config module nxtomomill.io.config.configbase module nxtomomill.io.config.confighandler module nxtomomill.io.config.dxconfig module nxtomomill.io.config.edfconfig module nxtomomill.io.config.fluoconfig module nxtomomill.io.config.hdf5config module nxtomomill.io.config.optionlevel module nxtomomill.io.framegroup module nxtomomill.io.utils module nxtomomill.nexus module nxtomomill.nexus.nxdetector module nxtomomill.nexus.nxinstrument module nxtomomill.nexus.nxmonitor module nxtomomill.nexus.nxobject module nxtomomill.nexus.nxsample module nxtomomill.nexus.nxsource module nxtomomill.nexus.nxtomo module nxtomomill.nexus.nxtransformations module nxtomomill.nexus.utils module nxtomomill.settings module nxtomomill.test module nxtomomill.tests module nxtomomill.tests.test_version module nxtomomill.tests.utils module nxtomomill.tests.utils.bliss module nxtomomill.tests.utils.dxfile module nxtomomill.utils module nxtomomill.utils.flat_reducer module nxtomomill.utils.frameappender module nxtomomill.utils.h5pyutils module nxtomomill.utils.hdf5 module nxtomomill.utils.io module nxtomomill.utils.nexus module nxtomomill.utils.utils module nxtomomill.version module

O

OptionLevel (class in nxtomomill.io.config.optionlevel)

OUPUT_CHECK (class in nxtomomill.converter.edf.checks)

P

PathType (class in nxtomomill.io.utils) PCOTOMO_INIT_TITLES (nxtomomill.settings.Tomo.H5 attribute) pcotomo_scan_range (nxtomomill.io.config.hdf5config.TomoHDF5Config property) pcotomo_start_angle_offset (nxtomomill.io.config.hdf5config.TomoHDF5Config property) PCOTomoAcquisition (class in nxtomomill.converter.hdf5.acquisition.pcotomoacquisition)

post_processing_check() (in module nxtomomill.converter.edf.edfconverter) process() (nxtomomill.utils.frameappender.FrameAppender method) process_edition() (nxtomomill.converter.hdf5.post_processing.dark_flat_copy.ZSeriesDarkFlatCopy method) proj_titles (nxtomomill.converter.hdf5.utils.H5ScanTitles attribute) PROJ_TITLES (nxtomomill.settings.Tomo.H5 attribute)

R

raise_error_if_issue (nxtomomill.converter.hdf5.acquisition.baseacquisition.BaseAcquisition property) (nxtomomill.converter.hdf5.acquisition.pcotomoacquisition.PCOTomoAcquisition property) (nxtomomill.converter.hdf5.acquisition.standardacquisition.StandardAcquisition property) (nxtomomill.converter.hdf5.acquisition.zseriesacquisition.ZSeriesBaseAcquisition property) ref_names (nxtomomill.converter.edf.edfconverter.EDFFileKeys attribute) REFS_NAMES (nxtomomill.settings.Tomo.EDF attribute) register_step() (nxtomomill.converter.hdf5.acquisition.baseacquisition.BaseAcquisition method) (nxtomomill.converter.hdf5.acquisition.pcotomoacquisition.PCOTomoAcquisition method) (nxtomomill.converter.hdf5.acquisition.standardacquisition.StandardAcquisition method) (nxtomomill.converter.hdf5.acquisition.zseriesacquisition.ZSeriesBaseAcquisition method)

remove_parenthesis_or_brackets() (in module nxtomomill.io.utils) ROT_ANGLE (nxtomomill.settings.Tomo.EDF attribute) rot_angle_keys (nxtomomill.converter.edf.edfconverter.EDFFileKeys attribute) (nxtomomill.converter.hdf5.utils.H5FileKeys attribute) ROT_ANGLE_KEYS (nxtomomill.settings.Tomo.H5 attribute)

S

SAMPLE_DETECTOR_DISTANCE_KEYS (nxtomomill.settings.Tomo.H5 attribute) SAMPLE_U_KEYS (nxtomomill.settings.Tomo.H5 attribute) SAMPLE_V_KEYS (nxtomomill.settings.Tomo.H5 attribute) sample_x (nxtomomill.converter.hdf5.acquisition.pcotomoacquisition.PCOTomoAcquisition property) (nxtomomill.converter.hdf5.acquisition.standardacquisition.StandardAcquisition property) sample_x_keys (nxtomomill.converter.hdf5.utils.H5FileKeys attribute) SAMPLE_X_KEYS (nxtomomill.settings.Tomo.H5 attribute) sample_y (nxtomomill.converter.hdf5.acquisition.pcotomoacquisition.PCOTomoAcquisition property) (nxtomomill.converter.hdf5.acquisition.standardacquisition.StandardAcquisition property) sample_y_keys (nxtomomill.converter.hdf5.utils.H5FileKeys attribute)

SAMPLE_Y_KEYS (nxtomomill.settings.Tomo.H5 attribute) SOURCE_SAMPLE_DISTANCE_KEYS (nxtomomill.settings.Tomo.H5 attribute) split() (in module nxtomomill.app.split_nxfile) split_timestamps() (in module nxtomomill.converter.hdf5.acquisition.utils) StandardAcquisition (class in nxtomomill.converter.hdf5.acquisition.standardacquisition) str2bool() (in module nxtomomill.app.z_concatenate_scans) (in module nxtomomill.app.zstages2nxs) str_datetime_to_numpy_datetime64() (in module nxtomomill.utils.utils) str_representation() (nxtomomill.io.framegroup.FrameGroup method) strip_extension() (in module nxtomomill.utils.utils)

T

template_to_format_string() (in module nxtomomill.app.zstages2nxs) test_version() (in module nxtomomill.tests.test_version) to_dict() (nxtomomill.io.config.configbase.ConfigBase method) (nxtomomill.io.config.edfconfig.TomoEDFConfig method) (nxtomomill.io.config.fluoconfig.TomoFluoConfig method) (nxtomomill.io.config.hdf5config.TomoHDF5Config method) to_ignore (nxtomomill.converter.edf.edfconverter.EDFFileKeys attribute) TO_IGNORE (nxtomomill.settings.Tomo.EDF attribute) to_NXtomos_pcotomo_v1() (nxtomomill.converter.hdf5.acquisition.pcotomoacquisition.PCOTomoAcquisition method) to_NXtomos_pcotomo_v2() (nxtomomill.converter.hdf5.acquisition.pcotomoacquisition.PCOTomoAcquisition method) Tomo (class in nxtomomill.settings)

Tomo.EDF (class in nxtomomill.settings) Tomo.H5 (class in nxtomomill.settings) TomoConfig (class in nxtomomill.converter.hdf5.acquisition.blisstomoconfig) TomoEDFConfig (class in nxtomomill.io.config.edfconfig) TomoFluoConfig (class in nxtomomill.io.config.fluoconfig) TomoHDF5Config (class in nxtomomill.io.config.hdf5config) TomoHDF5ConfigHandler (class in nxtomomill.io.config.confighandler) translation_y_keys (nxtomomill.converter.hdf5.utils.H5FileKeys attribute) TRANSLATION_Y_KEYS (nxtomomill.settings.Tomo.H5 attribute) translation_z_keys (nxtomomill.converter.hdf5.utils.H5FileKeys attribute) TRANSLATION_Z_KEYS (nxtomomill.settings.Tomo.H5 attribute)

V

valid_camera_names (nxtomomill.converter.hdf5.utils.H5FileKeys attribute)

version() (in module nxtomomill.converter.version)

W

write_as_nxtomo() (nxtomomill.converter.hdf5.acquisition.baseacquisition.BaseAcquisition method) (nxtomomill.converter.hdf5.acquisition.pcotomoacquisition.PCOTomoAcquisition method) (nxtomomill.converter.hdf5.acquisition.standardacquisition.StandardAcquisition method) (nxtomomill.converter.hdf5.acquisition.zseriesacquisition.ZSeriesBaseAcquisition method)

X

x_pixel_size (nxtomomill.converter.hdf5.utils.H5FileKeys attribute) X_PIXEL_SIZE (nxtomomill.settings.Tomo.H5 attribute)

X_TRANS (nxtomomill.settings.Tomo.EDF attribute) x_trans_keys (nxtomomill.converter.edf.edfconverter.EDFFileKeys attribute)

Y

y_pixel_size (nxtomomill.converter.hdf5.utils.H5FileKeys attribute) Y_PIXEL_SIZE (nxtomomill.settings.Tomo.H5 attribute)

Y_TRANS (nxtomomill.settings.Tomo.EDF attribute) y_trans_keys (nxtomomill.converter.edf.edfconverter.EDFFileKeys attribute)

Z

Z_TRANS (nxtomomill.settings.Tomo.EDF attribute) z_trans_keys (nxtomomill.converter.edf.edfconverter.EDFFileKeys attribute)

ZSERIE_INIT_TITLES (nxtomomill.settings.Tomo.H5 attribute) ZSeriesBaseAcquisition (class in nxtomomill.converter.hdf5.acquisition.zseriesacquisition) ZSeriesDarkFlatCopy (class in nxtomomill.converter.hdf5.post_processing.dark_flat_copy)