Index

_

__init__() (nxtomomill.converter.baseconverter.BaseConverter method) (nxtomomill.converter.edf.checks.OUPUT_CHECK method) (nxtomomill.converter.edf.edfconverter.EDFFileKeys method) (nxtomomill.converter.hdf5.acquisition.baseacquisition.BaseAcquisition method) (nxtomomill.converter.hdf5.acquisition.blisstomoconfig.TomoConfig method) (nxtomomill.converter.hdf5.acquisition.pcotomoacquisition.PCOTomoAcquisition method) (nxtomomill.converter.hdf5.acquisition.standardacquisition.StandardAcquisition method) (nxtomomill.converter.hdf5.acquisition.xrd3dacquisition.XRD3DAcquisition method) (nxtomomill.converter.hdf5.acquisition.xrdctacquisition.XRDCTAcquisition method) (nxtomomill.converter.hdf5.acquisition.zseriesacquisition.ZSeriesBaseAcquisition method) (nxtomomill.converter.hdf5.utils.H5FileKeys method) (nxtomomill.converter.hdf5.utils.H5ScanTitles method) (nxtomomill.io.acquisitionstep.AcquisitionStep method) (nxtomomill.io.config.configbase.ConfigBase method) (nxtomomill.io.config.confighandler.BaseHDF5ConfigHandler method) (nxtomomill.io.config.confighandler.TomoHDF5ConfigHandler method) (nxtomomill.io.config.confighandler.XRD3DHDF5ConfigHandler method) (nxtomomill.io.config.edfconfig.OptionLevel method) (nxtomomill.io.config.edfconfig.TomoEDFConfig method) (nxtomomill.io.config.hdf5config.DXFileConfiguration method) (nxtomomill.io.config.hdf5config.TomoHDF5Config method) (nxtomomill.io.config.hdf5config.XRD3DHDF5Config method) (nxtomomill.io.framegroup.FrameGroup method) (nxtomomill.io.utils.PathType method) (nxtomomill.settings.Tomo method) (nxtomomill.settings.XRD3D method) (nxtomomill.test.utils.bliss.MockBlissAcquisition method) (nxtomomill.test.utils.dxfile.MockDxFile method) (nxtomomill.utils.frameappender.FrameAppender method) (nxtomomill.utils.hdf5.DatasetReader method) (nxtomomill.utils.hdf5.EntryReader method) (nxtomomill.utils.progress.Progress method) (nxtomomill.utils.utils.FileExtension method) (nxtomomill.utils.utils.Format method)

A

acq_expo_time_keys (nxtomomill.converter.hdf5.utils.H5FileKeys attribute) AcquisitionStep (class in nxtomomill.io.acquisitionstep) add_dark_flat_nx_file() (in module nxtomomill.utils.utils) add_dark_to_dict() (in module nxtomomill.app.z_concatenate_scans)

add_flat_to_dict() (in module nxtomomill.app.z_concatenate_scans) align_titles (nxtomomill.converter.hdf5.utils.H5ScanTitles attribute) ALIGNMENT_TITLES (nxtomomill.settings.Tomo.H5 attribute) (nxtomomill.settings.XRD3D.H5 attribute)

B

BaseAcquisition (class in nxtomomill.converter.hdf5.acquisition.baseacquisition) BaseConverter (class in nxtomomill.converter.baseconverter) BaseHDF5ConfigHandler (class in nxtomomill.io.config.confighandler)

build_configuration() (nxtomomill.io.config.confighandler.BaseHDF5ConfigHandler method) (nxtomomill.io.config.confighandler.TomoHDF5ConfigHandler method) (nxtomomill.io.config.confighandler.XRD3DHDF5ConfigHandler method)

C

calc_hexversion() (in module nxtomomill.version) cast_and_check_array_1D() (in module nxtomomill.utils.nexus) change_image_key_control() (in module nxtomomill.utils.utils) clear_entries_and_subentries() (nxtomomill.io.config.hdf5config.TomoHDF5Config method) (nxtomomill.io.config.hdf5config.XRD3DHDF5Config method) clear_titles() (nxtomomill.io.config.hdf5config.TomoHDF5Config method) (nxtomomill.io.config.hdf5config.XRD3DHDF5Config method) compare_volumes() (in module nxtomomill.converter.edf.checks) concatenate() (in module nxtomomill.utils.nexus)

ConfigBase (class in nxtomomill.io.config.configbase) convert_2elmts__tuple_to_float() (in module nxtomomill.app.dxfile2nx) convert_str_to_bool() (in module nxtomomill.io.utils) convert_str_to_frame_grp() (in module nxtomomill.io.utils) convert_str_to_tuple() (in module nxtomomill.io.utils) count() (nxtomomill.converter.edf.edfconverter.EDFFileKeys method) (nxtomomill.converter.hdf5.utils.H5FileKeys method) (nxtomomill.converter.hdf5.utils.H5ScanTitles method) create_nx_data_group() (in module nxtomomill.utils.nexus)

D

dark_names (nxtomomill.converter.edf.edfconverter.EDFFileKeys attribute) dark_titles (nxtomomill.converter.hdf5.utils.H5ScanTitles attribute) DARK_TITLES (nxtomomill.settings.Tomo.H5 attribute) (nxtomomill.settings.XRD3D.H5 attribute) DatasetReader (class in nxtomomill.utils.hdf5) deduce_machine_electric_current() (in module nxtomomill.converter.hdf5.acquisition.utils) deprecated() (in module nxtomomill.utils.io)

deprecated_warning() (in module nxtomomill.utils.io) diode_keys (nxtomomill.converter.hdf5.utils.H5FileKeys attribute) DIODE_KEYS (nxtomomill.settings.Tomo.H5 attribute) (nxtomomill.settings.XRD3D.H5 attribute) DISTANCE_KEYS (nxtomomill.settings.Tomo.H5 attribute) (nxtomomill.settings.XRD3D.H5 attribute) DXFileConfiguration (class in nxtomomill.io.config.hdf5config)

E

edf_to_nx() (in module nxtomomill.converter.edf.edfconverter) EDFFileKeys (class in nxtomomill.converter.edf.edfconverter) embed_url() (in module nxtomomill.utils.utils)

end_process() (nxtomomill.utils.progress.Progress method) EntryReader (class in nxtomomill.utils.hdf5) extract_darks_flats() (in module nxtomomill.utils.flat_reducer)

F

FileExtension (class in nxtomomill.utils.utils) filter_acqui_frame_type() (in module nxtomomill.io.framegroup) filter_str_def() (in module nxtomomill.io.utils) flat_reducer() (in module nxtomomill.utils.flat_reducer) flat_titles (nxtomomill.converter.hdf5.utils.H5ScanTitles attribute) FLAT_TITLES (nxtomomill.settings.Tomo.H5 attribute) (nxtomomill.settings.XRD3D.H5 attribute) Format (class in nxtomomill.utils.utils) FrameAppender (class in nxtomomill.utils.frameappender) FrameGroup (class in nxtomomill.io.framegroup) FrameGroup.Info (class in nxtomomill.io.framegroup)

frm_str() (nxtomomill.io.framegroup.FrameGroup static method) from_data_url_to_virtual_source() (in module nxtomomill.utils.h5pyutils) from_dict() (nxtomomill.io.config.edfconfig.TomoEDFConfig static method) (nxtomomill.io.config.hdf5config.TomoHDF5Config static method) (nxtomomill.io.config.hdf5config.XRD3DHDF5Config static method) from_dx_config_to_nx() (in module nxtomomill.converter.dxfile.dxfileconverter) from_dx_to_nx() (in module nxtomomill.converter.dxfile.dxfileconverter) from_edf_to_nx() (in module nxtomomill.converter.edf.edfconverter) from_fscan_to_nx() (in module nxtomomill.converter.fscan.fscanconverter) from_h5_to_nx() (in module nxtomomill.converter.hdf5.hdf5converter) from_technique_group() (nxtomomill.converter.hdf5.acquisition.blisstomoconfig.TomoConfig static method) from_virtual_source_to_data_url() (in module nxtomomill.utils.h5pyutils)

G

generate_default_edf_config() (in module nxtomomill.io.config.edfconfig) generate_default_h5_config() (in module nxtomomill.io.config.hdf5config) get_arguments() (in module nxtomomill.app.z_concatenate_scans) (in module nxtomomill.app.zstages2nxs) get_axis_scale_types() (nxtomomill.converter.hdf5.acquisition.baseacquisition.BaseAcquisition method) (nxtomomill.converter.hdf5.acquisition.pcotomoacquisition.PCOTomoAcquisition method) (nxtomomill.converter.hdf5.acquisition.standardacquisition.StandardAcquisition method) (nxtomomill.converter.hdf5.acquisition.xrd3dacquisition.XRD3DAcquisition method) (nxtomomill.converter.hdf5.acquisition.xrdctacquisition.XRDCTAcquisition method) (nxtomomill.converter.hdf5.acquisition.zseriesacquisition.ZSeriesBaseAcquisition method) get_bliss_tomo_entries() (in module nxtomomill.converter.hdf5.hdf5converter) get_byte_order() (in module nxtomomill.converter.edf.edfconverter) get_data() (in module nxtomomill.utils.nexus) get_data_and_unit() (in module nxtomomill.utils.nexus) get_dataset_name_from_motor() (in module nxtomomill.converter.hdf5.acquisition.baseacquisition) get_default_output_file() (in module nxtomomill.converter.hdf5.utils)

get_entry_type() (in module nxtomomill.converter.hdf5.acquisition.utils) get_expected_nx_tomo() (nxtomomill.converter.hdf5.acquisition.baseacquisition.BaseAcquisition method) (nxtomomill.converter.hdf5.acquisition.pcotomoacquisition.PCOTomoAcquisition method) (nxtomomill.converter.hdf5.acquisition.standardacquisition.StandardAcquisition method) (nxtomomill.converter.hdf5.acquisition.xrd3dacquisition.XRD3DAcquisition method) (nxtomomill.converter.hdf5.acquisition.xrdctacquisition.XRDCTAcquisition method) (nxtomomill.converter.hdf5.acquisition.zseriesacquisition.ZSeriesBaseAcquisition method) get_extra_params_default_unit() (nxtomomill.io.config.hdf5config.TomoHDF5Config static method) (nxtomomill.io.config.hdf5config.XRD3DHDF5Config static method) get_file_name() (in module nxtomomill.utils.utils) get_nx_detectors() (in module nxtomomill.converter.hdf5.acquisition.utils) get_output_file() (in module nxtomomill.app.nxcopy) get_pcotomo_version() (nxtomomill.converter.hdf5.acquisition.pcotomoacquisition.PCOTomoAcquisition method) get_standard_sub_acquisitions() (nxtomomill.converter.hdf5.acquisition.zseriesacquisition.ZSeriesBaseAcquisition method) get_tuple_of_keys_from_cmd() (in module nxtomomill.utils.utils) guess_nx_detector() (in module nxtomomill.converter.hdf5.acquisition.utils)

H

H5FileKeys (class in nxtomomill.converter.hdf5.utils) H5ScanTitles (class in nxtomomill.converter.hdf5.utils) has_diode (nxtomomill.converter.hdf5.acquisition.baseacquisition.BaseAcquisition property) (nxtomomill.converter.hdf5.acquisition.pcotomoacquisition.PCOTomoAcquisition property) (nxtomomill.converter.hdf5.acquisition.standardacquisition.StandardAcquisition property) (nxtomomill.converter.hdf5.acquisition.xrd3dacquisition.XRD3DAcquisition property) (nxtomomill.converter.hdf5.acquisition.xrdctacquisition.XRDCTAcquisition property) (nxtomomill.converter.hdf5.acquisition.zseriesacquisition.ZSeriesBaseAcquisition property)

has_valid_detector() (in module nxtomomill.converter.hdf5.acquisition.utils)

I

increase_advancement() (nxtomomill.utils.progress.Progress method) index() (nxtomomill.converter.edf.edfconverter.EDFFileKeys method) (nxtomomill.converter.hdf5.utils.H5FileKeys method) (nxtomomill.converter.hdf5.utils.H5ScanTitles method) init_pcotomo_titles (nxtomomill.converter.hdf5.utils.H5ScanTitles attribute) init_titles (nxtomomill.converter.hdf5.utils.H5ScanTitles attribute) INIT_TITLES (nxtomomill.settings.Tomo.H5 attribute) (nxtomomill.settings.XRD3D.H5 attribute) init_zserie_titles (nxtomomill.converter.hdf5.utils.H5ScanTitles attribute) is_different_sequence() (nxtomomill.converter.hdf5.acquisition.baseacquisition.BaseAcquisition method) (nxtomomill.converter.hdf5.acquisition.pcotomoacquisition.PCOTomoAcquisition method) (nxtomomill.converter.hdf5.acquisition.standardacquisition.StandardAcquisition method) (nxtomomill.converter.hdf5.acquisition.xrd3dacquisition.XRD3DAcquisition method) (nxtomomill.converter.hdf5.acquisition.xrdctacquisition.XRDCTAcquisition method) (nxtomomill.converter.hdf5.acquisition.zseriesacquisition.ZSeriesBaseAcquisition method)

is_nx_tomo_entry() (in module nxtomomill.utils.utils) is_pcotomo_frm_titles() (in module nxtomomill.converter.hdf5.acquisition.zseriesacquisition) is_url_path() (in module nxtomomill.io.utils) is_using_urls (nxtomomill.io.config.hdf5config.TomoHDF5Config property) (nxtomomill.io.config.hdf5config.XRD3DHDF5Config property) is_xrd_ct (nxtomomill.converter.hdf5.acquisition.baseacquisition.BaseAcquisition property) (nxtomomill.converter.hdf5.acquisition.pcotomoacquisition.PCOTomoAcquisition property) (nxtomomill.converter.hdf5.acquisition.standardacquisition.StandardAcquisition property) (nxtomomill.converter.hdf5.acquisition.xrd3dacquisition.XRD3DAcquisition property) (nxtomomill.converter.hdf5.acquisition.xrdctacquisition.XRDCTAcquisition property) (nxtomomill.converter.hdf5.acquisition.zseriesacquisition.ZSeriesBaseAcquisition property) is_z_series_frm_titles() (in module nxtomomill.converter.hdf5.acquisition.zseriesacquisition) is_z_series_frm_z_translation() (in module nxtomomill.converter.hdf5.acquisition.zseriesacquisition)

K

known_machine_electric_current (nxtomomill.converter.hdf5.acquisition.pcotomoacquisition.PCOTomoAcquisition property) (nxtomomill.converter.hdf5.acquisition.standardacquisition.StandardAcquisition property) (nxtomomill.converter.hdf5.acquisition.xrd3dacquisition.XRD3DAcquisition property) (nxtomomill.converter.hdf5.acquisition.xrdctacquisition.XRDCTAcquisition property)

L

link_nxbeam_to_root() (in module nxtomomill.utils.nexus) list_to_str() (nxtomomill.io.framegroup.FrameGroup static method) load_from_dict() (nxtomomill.io.config.configbase.ConfigBase method) (nxtomomill.io.config.edfconfig.TomoEDFConfig method) (nxtomomill.io.config.hdf5config.TomoHDF5Config method) (nxtomomill.io.config.hdf5config.XRD3DHDF5Config method)

M

machine_elec_current_keys (nxtomomill.converter.edf.edfconverter.EDFFileKeys attribute) MACHINE_ELECTRIC_CURRENT_KEYS (nxtomomill.settings.Tomo.H5 attribute) (nxtomomill.settings.XRD3D.H5 attribute) main() (in module nxtomomill.app.dxfile2nx) (in module nxtomomill.app.edf2nx) (in module nxtomomill.app.edf2nx_check) (in module nxtomomill.app.edfconfig) (in module nxtomomill.app.fscan2nx) (in module nxtomomill.app.h52nx) (in module nxtomomill.app.h5_3dxrd2nx) (in module nxtomomill.app.h5config) (in module nxtomomill.app.nxcopy) (in module nxtomomill.app.patch_nx) (in module nxtomomill.app.split_nxfile) (in module nxtomomill.app.z_concatenate_scans) (in module nxtomomill.app.zstages2nxs) MockBlissAcquisition (class in nxtomomill.test.utils.bliss) MockDxFile (class in nxtomomill.test.utils.dxfile) module nxtomomill nxtomomill.app nxtomomill.app.dxfile2nx nxtomomill.app.edf2nx nxtomomill.app.edf2nx_check nxtomomill.app.edfconfig nxtomomill.app.fscan2nx nxtomomill.app.h52nx nxtomomill.app.h5_3dxrd2nx nxtomomill.app.h5config nxtomomill.app.nxcopy nxtomomill.app.patch_nx nxtomomill.app.split_nxfile nxtomomill.app.z_concatenate_scans nxtomomill.app.zstages2nxs nxtomomill.converter nxtomomill.converter.baseconverter nxtomomill.converter.dxfile nxtomomill.converter.dxfile.dxfileconverter nxtomomill.converter.edf nxtomomill.converter.edf.checks nxtomomill.converter.edf.edfconverter nxtomomill.converter.fscan nxtomomill.converter.fscan.fscanconverter nxtomomill.converter.hdf5 nxtomomill.converter.hdf5.acquisition nxtomomill.converter.hdf5.acquisition.baseacquisition nxtomomill.converter.hdf5.acquisition.blisstomoconfig nxtomomill.converter.hdf5.acquisition.pcotomoacquisition nxtomomill.converter.hdf5.acquisition.standardacquisition nxtomomill.converter.hdf5.acquisition.utils nxtomomill.converter.hdf5.acquisition.xrd3dacquisition nxtomomill.converter.hdf5.acquisition.xrdctacquisition nxtomomill.converter.hdf5.acquisition.zseriesacquisition nxtomomill.converter.hdf5.hdf5converter nxtomomill.converter.hdf5.utils nxtomomill.converter.version nxtomomill.io nxtomomill.io.acquisitionstep nxtomomill.io.config nxtomomill.io.config.configbase nxtomomill.io.config.confighandler nxtomomill.io.config.edfconfig nxtomomill.io.config.hdf5config nxtomomill.io.framegroup nxtomomill.io.utils nxtomomill.nexus nxtomomill.nexus.nxdetector nxtomomill.nexus.nxinstrument nxtomomill.nexus.nxmonitor nxtomomill.nexus.nxobject nxtomomill.nexus.nxsample nxtomomill.nexus.nxsource nxtomomill.nexus.nxtomo nxtomomill.nexus.nxtransformations nxtomomill.nexus.utils nxtomomill.settings nxtomomill.test nxtomomill.test.test_version nxtomomill.test.utils nxtomomill.test.utils.bliss nxtomomill.test.utils.dxfile nxtomomill.utils nxtomomill.utils.flat_reducer nxtomomill.utils.frameappender nxtomomill.utils.h5pyutils nxtomomill.utils.hdf5 nxtomomill.utils.io nxtomomill.utils.nexus nxtomomill.utils.progress nxtomomill.utils.utils nxtomomill.version

motor_mne_keys (nxtomomill.converter.edf.edfconverter.EDFFileKeys attribute) motor_pos_keys (nxtomomill.converter.edf.edfconverter.EDFFileKeys attribute)

N

nxtomomill module nxtomomill.app module nxtomomill.app.dxfile2nx module nxtomomill.app.edf2nx module nxtomomill.app.edf2nx_check module nxtomomill.app.edfconfig module nxtomomill.app.fscan2nx module nxtomomill.app.h52nx module nxtomomill.app.h5_3dxrd2nx module nxtomomill.app.h5config module nxtomomill.app.nxcopy module nxtomomill.app.patch_nx module nxtomomill.app.split_nxfile module nxtomomill.app.z_concatenate_scans module nxtomomill.app.zstages2nxs module nxtomomill.converter module nxtomomill.converter.baseconverter module nxtomomill.converter.dxfile module nxtomomill.converter.dxfile.dxfileconverter module nxtomomill.converter.edf module nxtomomill.converter.edf.checks module nxtomomill.converter.edf.edfconverter module nxtomomill.converter.fscan module nxtomomill.converter.fscan.fscanconverter module nxtomomill.converter.hdf5 module nxtomomill.converter.hdf5.acquisition module nxtomomill.converter.hdf5.acquisition.baseacquisition module nxtomomill.converter.hdf5.acquisition.blisstomoconfig module nxtomomill.converter.hdf5.acquisition.pcotomoacquisition module nxtomomill.converter.hdf5.acquisition.standardacquisition module nxtomomill.converter.hdf5.acquisition.utils module nxtomomill.converter.hdf5.acquisition.xrd3dacquisition module nxtomomill.converter.hdf5.acquisition.xrdctacquisition module nxtomomill.converter.hdf5.acquisition.zseriesacquisition module nxtomomill.converter.hdf5.hdf5converter module nxtomomill.converter.hdf5.utils module

nxtomomill.converter.version module nxtomomill.io module nxtomomill.io.acquisitionstep module nxtomomill.io.config module nxtomomill.io.config.configbase module nxtomomill.io.config.confighandler module nxtomomill.io.config.edfconfig module nxtomomill.io.config.hdf5config module nxtomomill.io.framegroup module nxtomomill.io.utils module nxtomomill.nexus module nxtomomill.nexus.nxdetector module nxtomomill.nexus.nxinstrument module nxtomomill.nexus.nxmonitor module nxtomomill.nexus.nxobject module nxtomomill.nexus.nxsample module nxtomomill.nexus.nxsource module nxtomomill.nexus.nxtomo module nxtomomill.nexus.nxtransformations module nxtomomill.nexus.utils module nxtomomill.settings module nxtomomill.test module nxtomomill.test.test_version module nxtomomill.test.utils module nxtomomill.test.utils.bliss module nxtomomill.test.utils.dxfile module nxtomomill.utils module nxtomomill.utils.flat_reducer module nxtomomill.utils.frameappender module nxtomomill.utils.h5pyutils module nxtomomill.utils.hdf5 module nxtomomill.utils.io module nxtomomill.utils.nexus module nxtomomill.utils.progress module nxtomomill.utils.utils module nxtomomill.version module

O

OptionLevel (class in nxtomomill.io.config.edfconfig)

OUPUT_CHECK (class in nxtomomill.converter.edf.checks)

P

PathType (class in nxtomomill.io.utils) PCOTOMO_INIT_TITLES (nxtomomill.settings.Tomo.H5 attribute) (nxtomomill.settings.XRD3D.H5 attribute) pcotomo_scan_range (nxtomomill.io.config.hdf5config.TomoHDF5Config property) (nxtomomill.io.config.hdf5config.XRD3DHDF5Config property) pcotomo_start_angle_offset (nxtomomill.io.config.hdf5config.TomoHDF5Config property) (nxtomomill.io.config.hdf5config.XRD3DHDF5Config property)

PCOTomoAcquisition (class in nxtomomill.converter.hdf5.acquisition.pcotomoacquisition) post_processing_check() (in module nxtomomill.converter.edf.edfconverter) process() (nxtomomill.utils.frameappender.FrameAppender method) Progress (class in nxtomomill.utils.progress) proj_titles (nxtomomill.converter.hdf5.utils.H5ScanTitles attribute) PROJ_TITLES (nxtomomill.settings.Tomo.H5 attribute) (nxtomomill.settings.XRD3D.H5 attribute)

R

raise_error_if_issue (nxtomomill.converter.hdf5.acquisition.baseacquisition.BaseAcquisition property) (nxtomomill.converter.hdf5.acquisition.pcotomoacquisition.PCOTomoAcquisition property) (nxtomomill.converter.hdf5.acquisition.standardacquisition.StandardAcquisition property) (nxtomomill.converter.hdf5.acquisition.xrd3dacquisition.XRD3DAcquisition property) (nxtomomill.converter.hdf5.acquisition.xrdctacquisition.XRDCTAcquisition property) (nxtomomill.converter.hdf5.acquisition.zseriesacquisition.ZSeriesBaseAcquisition property) ref_names (nxtomomill.converter.edf.edfconverter.EDFFileKeys attribute) register_step() (nxtomomill.converter.hdf5.acquisition.baseacquisition.BaseAcquisition method) (nxtomomill.converter.hdf5.acquisition.pcotomoacquisition.PCOTomoAcquisition method) (nxtomomill.converter.hdf5.acquisition.standardacquisition.StandardAcquisition method) (nxtomomill.converter.hdf5.acquisition.xrd3dacquisition.XRD3DAcquisition method) (nxtomomill.converter.hdf5.acquisition.xrdctacquisition.XRDCTAcquisition method) (nxtomomill.converter.hdf5.acquisition.zseriesacquisition.ZSeriesBaseAcquisition method) remove_parenthesis_or_brackets() (in module nxtomomill.io.utils)

require_x_translation (nxtomomill.converter.hdf5.acquisition.baseacquisition.BaseAcquisition property) (nxtomomill.converter.hdf5.acquisition.pcotomoacquisition.PCOTomoAcquisition property) (nxtomomill.converter.hdf5.acquisition.standardacquisition.StandardAcquisition property) (nxtomomill.converter.hdf5.acquisition.xrd3dacquisition.XRD3DAcquisition property) (nxtomomill.converter.hdf5.acquisition.xrdctacquisition.XRDCTAcquisition property) (nxtomomill.converter.hdf5.acquisition.zseriesacquisition.ZSeriesBaseAcquisition property) require_z_translation (nxtomomill.converter.hdf5.acquisition.baseacquisition.BaseAcquisition property) (nxtomomill.converter.hdf5.acquisition.pcotomoacquisition.PCOTomoAcquisition property) (nxtomomill.converter.hdf5.acquisition.standardacquisition.StandardAcquisition property) (nxtomomill.converter.hdf5.acquisition.xrd3dacquisition.XRD3DAcquisition property) (nxtomomill.converter.hdf5.acquisition.xrdctacquisition.XRDCTAcquisition property) (nxtomomill.converter.hdf5.acquisition.zseriesacquisition.ZSeriesBaseAcquisition property) reset() (nxtomomill.utils.progress.Progress method) rot_angle_keys (nxtomomill.converter.edf.edfconverter.EDFFileKeys attribute) (nxtomomill.converter.hdf5.utils.H5FileKeys attribute)

S

set_advancement() (nxtomomill.utils.progress.Progress method) set_max_advancement() (nxtomomill.utils.progress.Progress method) split() (in module nxtomomill.app.split_nxfile) split_timestamps() (in module nxtomomill.converter.hdf5.acquisition.utils) StandardAcquisition (class in nxtomomill.converter.hdf5.acquisition.standardacquisition)

str2bool() (in module nxtomomill.app.z_concatenate_scans) (in module nxtomomill.app.zstages2nxs) str_datetime_to_numpy_datetime64() (in module nxtomomill.utils.utils) str_representation() (nxtomomill.io.framegroup.FrameGroup method) strip_extension() (in module nxtomomill.utils.utils)

T

template_to_format_string() (in module nxtomomill.app.zstages2nxs) test_version() (in module nxtomomill.test.test_version) to_dict() (nxtomomill.io.config.configbase.ConfigBase method) (nxtomomill.io.config.edfconfig.TomoEDFConfig method) (nxtomomill.io.config.hdf5config.TomoHDF5Config method) (nxtomomill.io.config.hdf5config.XRD3DHDF5Config method) to_ignore (nxtomomill.converter.edf.edfconverter.EDFFileKeys attribute) to_NXtomos_pcotomo_v1() (nxtomomill.converter.hdf5.acquisition.pcotomoacquisition.PCOTomoAcquisition method)

to_NXtomos_pcotomo_v2() (nxtomomill.converter.hdf5.acquisition.pcotomoacquisition.PCOTomoAcquisition method) Tomo (class in nxtomomill.settings) Tomo.EDF (class in nxtomomill.settings) Tomo.H5 (class in nxtomomill.settings) TomoConfig (class in nxtomomill.converter.hdf5.acquisition.blisstomoconfig) TomoEDFConfig (class in nxtomomill.io.config.edfconfig) TomoHDF5Config (class in nxtomomill.io.config.hdf5config) TomoHDF5ConfigHandler (class in nxtomomill.io.config.confighandler)

V

valid_camera_names (nxtomomill.converter.hdf5.utils.H5FileKeys attribute)

version() (in module nxtomomill.converter.version)

X

x_pixel_size (nxtomomill.converter.hdf5.utils.H5FileKeys attribute) X_PIXEL_SIZE (nxtomomill.settings.Tomo.H5 attribute) (nxtomomill.settings.XRD3D.H5 attribute) x_trans_keys (nxtomomill.converter.edf.edfconverter.EDFFileKeys attribute) (nxtomomill.converter.hdf5.utils.H5FileKeys attribute) X_TRANS_KEYS (nxtomomill.settings.Tomo.H5 attribute) (nxtomomill.settings.XRD3D.H5 attribute)

XRD3D (class in nxtomomill.settings) XRD3D.EDF (class in nxtomomill.settings) XRD3D.H5 (class in nxtomomill.settings) XRD3DAcquisition (class in nxtomomill.converter.hdf5.acquisition.xrd3dacquisition) XRD3DHDF5Config (class in nxtomomill.io.config.hdf5config) XRD3DHDF5ConfigHandler (class in nxtomomill.io.config.confighandler) XRDCTAcquisition (class in nxtomomill.converter.hdf5.acquisition.xrdctacquisition)

Y

y_pixel_size (nxtomomill.converter.hdf5.utils.H5FileKeys attribute) y_rot_key (nxtomomill.converter.hdf5.utils.H5FileKeys attribute) Y_ROT_KEY (nxtomomill.settings.Tomo.H5 attribute) (nxtomomill.settings.XRD3D.H5 attribute)

y_trans_keys (nxtomomill.converter.edf.edfconverter.EDFFileKeys attribute) (nxtomomill.converter.hdf5.utils.H5FileKeys attribute) Y_TRANS_KEYS (nxtomomill.settings.Tomo.H5 attribute) (nxtomomill.settings.XRD3D.H5 attribute)

Z

z_trans_keys (nxtomomill.converter.edf.edfconverter.EDFFileKeys attribute) (nxtomomill.converter.hdf5.utils.H5FileKeys attribute) Z_TRANS_KEYS (nxtomomill.settings.Tomo.H5 attribute) (nxtomomill.settings.XRD3D.H5 attribute)

ZSERIE_INIT_TITLES (nxtomomill.settings.Tomo.H5 attribute) (nxtomomill.settings.XRD3D.H5 attribute) ZSeriesBaseAcquisition (class in nxtomomill.converter.hdf5.acquisition.zseriesacquisition)