nxtomomill.converter.hdf5.post_processing.dark_flat_copy.ZSeriesDarkFlatCopy#
- class nxtomomill.converter.hdf5.post_processing.dark_flat_copy.ZSeriesDarkFlatCopy(series, acquisition_to_nxtomo)[source]#
Bases:
objectz-series version 3 can require to reuse dark-flat from a bliss scan done at the start or at the end of the series.
This class is an helper to do this processing.
- __init__(series, acquisition_to_nxtomo)[source]#
- Parameters
series – list of acquisition part of the series. warning: we expect this list to be ordered.
acquisition_to_nxtomo – for each acquisition in “series” this dict can provide the nxtomo created during conversion. The value is expected to the None if the conversion failed or (file_path, data_path)
Warning
even if list contains BaseAcquisition; those are sub_acquisitions of ZSeriesBaseAcquisition
Methods
__init__(series, acquisition_to_nxtomo)- param series
list of acquisition part of the series. warning: we expect this list to be ordered.
build_edition_to_do(darks_start_urls, ...)build all the edition to do to complete the dark and flat copy according to z-series v3 configuration.
Build the list of DataUrl that can be used for copy.
process_edition(editions_to_do[, ...])do edition
run()- rtype
None
Attributes
first_acquisition- rtype
last_acquisition- rtype
- build_edition_to_do(darks_start_urls, flats_start_urls, darks_end_urls, flats_end_urls)[source]#
build all the edition to do to complete the dark and flat copy according to z-series v3 configuration.
- build_mapping_to_dark_flat_source()[source]#
Build the list of DataUrl that can be used for copy.
Output looks like: {
- file_path_first_nxtomo, data_path_first_nxtomo: {
ImageKey.DARK_FIELD: (DataUrlSeries1, DataUrlSeries2), ImageKey.FLAT_FIELD: (DataUrlSeries1, …),
}, file_path_last_nxtomo, data_path_last_nxtomo: {
ImageKey.DARK_FIELD: (DataUrlSeries1, DataUrlSeries2), ImageKey.FLAT_FIELD: (DataUrlSeries1, …),
},
}