nxtomomill.app.dxfile2nx#
Application to convert from dx file (HDF5) to NXTomo (HDF5) file
usage: nxtomomill dxfile2nx [-h] [--input_entry INPUT_ENTRY] [--output_entry OUTPUT_ENTRY] [--file_extension FILE_EXTENSION] [--scan-range SCAN_RANGE] [--pixel-size PIXEL_SIZE] [--fov FIELD_OF_VIEW]
[--distance DISTANCE] [--energy ENERGY] [--overwrite] [--data-copy]
input_file output_file
convert acquisition contained in provided dx file to NXTomo entry
positional arguments:
input_file master file of the acquisition
output_file output .nx or .h5 file
optional arguments:
-h, --help show this help message and exit
--input_entry INPUT_ENTRY
h5py group path to be converted
--output_entry OUTPUT_ENTRY
h5py group path to store the NXTomo
--file_extension FILE_EXTENSION
extension of the output file. Valid values are .h5/.hdf5/.nx
--scan-range SCAN_RANGE
scan range of the projections. Dark and flat will always be considered with rotation angle == scan_range[0]
--pixel-size PIXEL_SIZE
pixel size in meter as (x pixel size, y pixel size)
--fov FIELD_OF_VIEW, --field-of-view FIELD_OF_VIEW
field of view. Can be Full or Half
--distance DISTANCE, --detector-sample-distance DISTANCE
sample to detector distance (in meter)
--energy ENERGY, --incident-beam-energy ENERGY
incident beam energy in keV
--overwrite Do not ask for user permission to overwrite output files
--data-copy Force data duplication of frames. This will permit to have an 'all-embed' file. Otherwise we will have link between the dxfile and the NXTomo.
For a complete tutorial you can have a look at dxfile2nx tutorial
Functions
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