nxtomomill.app.edf2nx

Application to convert a tomo dataset written in edf into and hdf5/nexus file.

usage: nxtomomill edf2nx [-h] [--dataset-basename DATASET_BASENAME] [--info-file INFO_FILE] [--config CONFIG] [scan_path] [output_file]

convert data acquired as edf to hdf5 - nexus compliant file format.

positional arguments:
scan_path             folder containing the edf files
output_file           foutput .h5 file

optional arguments:
-h, --help            show this help message and exit
--dataset-basename DATASET_BASENAME, --file-prefix DATASET_BASENAME
                        file prefix to be used to deduce projections
--info-file INFO_FILE
                        .info file containing acquisition information (ScanRange, Energy, TOMO_N...)
--config CONFIG, --configuration-file CONFIG, --configuration CONFIG
                        file containing the full configuration to convert from SPEC-EDF to bliss to nexus. Default configuration file can be created from `nxtomomill edf-config` command

For a complete tutorial you can have a look at edf2nx tutorial

Functions

main(argv)