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  • API Reference
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  • pypi
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  • nxtomomill
    • nxtomomill.app
      • nxtomomill.app.dxfile2nx
        • nxtomomill.app.dxfile2nx.convert_2elmts__tuple_to_float
        • nxtomomill.app.dxfile2nx.main
      • nxtomomill.app.edf2nx
        • nxtomomill.app.edf2nx.main
      • nxtomomill.app.edf2nx_check
        • nxtomomill.app.edf2nx_check.main
      • nxtomomill.app.edfconfig
        • nxtomomill.app.edfconfig.main
      • nxtomomill.app.fluo2nx
        • nxtomomill.app.fluo2nx.main
      • nxtomomill.app.fluoconfig
        • nxtomomill.app.fluoconfig.main
      • nxtomomill.app.fscan2nx
        • nxtomomill.app.fscan2nx.main
      • nxtomomill.app.h52nx
        • nxtomomill.app.h52nx.main
      • nxtomomill.app.h5config
        • nxtomomill.app.h5config.main
      • nxtomomill.app.nxcopy
        • nxtomomill.app.nxcopy.get_output_file
        • nxtomomill.app.nxcopy.main
      • nxtomomill.app.patch_nx
        • nxtomomill.app.patch_nx.main
      • nxtomomill.app.split_nxfile
        • nxtomomill.app.split_nxfile.main
        • nxtomomill.app.split_nxfile.split
      • nxtomomill.app.z_concatenate_scans
        • nxtomomill.app.z_concatenate_scans.add_dark_to_dict
        • nxtomomill.app.z_concatenate_scans.add_flat_to_dict
        • nxtomomill.app.z_concatenate_scans.get_arguments
        • nxtomomill.app.z_concatenate_scans.main
        • nxtomomill.app.z_concatenate_scans.str2bool
      • nxtomomill.app.zstages2nxs
        • nxtomomill.app.zstages2nxs.get_arguments
        • nxtomomill.app.zstages2nxs.main
        • nxtomomill.app.zstages2nxs.str2bool
        • nxtomomill.app.zstages2nxs.template_to_format_string
    • nxtomomill.converter
      • nxtomomill.converter.baseconverter
        • nxtomomill.converter.baseconverter.BaseConverter
      • nxtomomill.converter.dxfile
        • nxtomomill.converter.dxfile.dxfileconverter
      • nxtomomill.converter.edf
        • nxtomomill.converter.edf.checks
        • nxtomomill.converter.edf.edfconverter
      • nxtomomill.converter.fluo
        • nxtomomill.converter.fluo.fluoconverter
      • nxtomomill.converter.fscan
        • nxtomomill.converter.fscan.fscanconverter
      • nxtomomill.converter.hdf5
        • nxtomomill.converter.hdf5.acquisition
        • nxtomomill.converter.hdf5.hdf5converter
        • nxtomomill.converter.hdf5.post_processing
        • nxtomomill.converter.hdf5.utils
      • nxtomomill.converter.version
        • nxtomomill.converter.version.version
    • nxtomomill.io
      • nxtomomill.io.acquisitionstep
        • nxtomomill.io.acquisitionstep.AcquisitionStep
      • nxtomomill.io.config
        • nxtomomill.io.config.configbase
        • nxtomomill.io.config.confighandler
        • nxtomomill.io.config.edfconfig
        • nxtomomill.io.config.fluoconfig
        • nxtomomill.io.config.hdf5config
        • nxtomomill.io.config.optionlevel
      • nxtomomill.io.framegroup
        • nxtomomill.io.framegroup.filter_acqui_frame_type
        • nxtomomill.io.framegroup.FrameGroup
      • nxtomomill.io.utils
        • nxtomomill.io.utils.convert_str_to_bool
        • nxtomomill.io.utils.convert_str_to_frame_grp
        • nxtomomill.io.utils.convert_str_to_tuple
        • nxtomomill.io.utils.filter_str_def
        • nxtomomill.io.utils.is_url_path
        • nxtomomill.io.utils.remove_parenthesis_or_brackets
        • nxtomomill.io.utils.PathType
    • nxtomomill.nexus
      • nxtomomill.nexus.nxdetector
      • nxtomomill.nexus.nxinstrument
      • nxtomomill.nexus.nxmonitor
      • nxtomomill.nexus.nxobject
      • nxtomomill.nexus.nxsample
      • nxtomomill.nexus.nxsource
      • nxtomomill.nexus.nxtomo
      • nxtomomill.nexus.nxtransformations
      • nxtomomill.nexus.utils
    • nxtomomill.settings
      • nxtomomill.settings.Tomo
    • nxtomomill.test
    • nxtomomill.tests
      • nxtomomill.tests.test_version
        • nxtomomill.tests.test_version.test_version
      • nxtomomill.tests.utils
        • nxtomomill.tests.utils.bliss
        • nxtomomill.tests.utils.dxfile
    • nxtomomill.utils
      • nxtomomill.utils.flat_reducer
        • nxtomomill.utils.flat_reducer.extract_darks_flats
        • nxtomomill.utils.flat_reducer.flat_reducer
      • nxtomomill.utils.frameappender
        • nxtomomill.utils.frameappender.FrameAppender
      • nxtomomill.utils.h5pyutils
        • nxtomomill.utils.h5pyutils.from_data_url_to_virtual_source
        • nxtomomill.utils.h5pyutils.from_virtual_source_to_data_url
      • nxtomomill.utils.hdf5
        • nxtomomill.utils.hdf5.DatasetReader
        • nxtomomill.utils.hdf5.EntryReader
      • nxtomomill.utils.io
        • nxtomomill.utils.io.deprecated
        • nxtomomill.utils.io.deprecated_warning
      • nxtomomill.utils.nexus
        • nxtomomill.utils.nexus.cast_and_check_array_1D
        • nxtomomill.utils.nexus.concatenate
        • nxtomomill.utils.nexus.create_nx_data_group
        • nxtomomill.utils.nexus.get_data
        • nxtomomill.utils.nexus.get_data_and_unit
        • nxtomomill.utils.nexus.link_nxbeam_to_root
      • nxtomomill.utils.utils
        • nxtomomill.utils.utils.add_dark_flat_nx_file
        • nxtomomill.utils.utils.change_image_key_control
        • nxtomomill.utils.utils.embed_url
        • nxtomomill.utils.utils.get_file_name
        • nxtomomill.utils.utils.get_tuple_of_keys_from_cmd
        • nxtomomill.utils.utils.is_nx_tomo_entry
        • nxtomomill.utils.utils.str_datetime_to_numpy_datetime64
        • nxtomomill.utils.utils.strip_extension
        • nxtomomill.utils.utils.FileExtension
    • nxtomomill.version
      • nxtomomill.version.calc_hexversion
  • API Reference
  • nxtomomill.io.config
  • nxtomomill.i...

nxtomomill.io.config.hdf5config#

Functions

generate_default_h5_config()

generate a default configuration for converting hdf5 to nx

Classes

DXFileConfiguration(input_file[, output_file])

TomoHDF5Config()

Configuration class to provide to the convert from h5 to nx

previous

nxtomomill.io.config.fluoconfig.TomoFluoConfig

next

nxtomomill.io.config.hdf5config.generate_default_h5_config
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