Index

_

__init__() (tomoscan.esrf.identifier.edfidentifier.EDFTomoScanIdentifier method) (tomoscan.esrf.identifier.edfidentifier.EDFVolumeIdentifier method) (tomoscan.esrf.identifier.folderidentifier.BaseFolderAndfilePrefixIdentifierMixIn method) (tomoscan.esrf.identifier.folderidentifier.BaseFolderIdentifierMixIn method) (tomoscan.esrf.identifier.hdf5Identifier.HDF5TomoScanIdentifier method) (tomoscan.esrf.identifier.hdf5Identifier.HDF5VolumeIdentifier method) (tomoscan.esrf.identifier.hdf5Identifier.NXtomoScanIdentifier method) (tomoscan.esrf.identifier.jp2kidentifier.JP2KVolumeIdentifier method) (tomoscan.esrf.identifier.rawidentifier.RawVolumeIdentifier method) (tomoscan.esrf.identifier.tiffidentifier.MultiTiffVolumeIdentifier method) (tomoscan.esrf.identifier.tiffidentifier.TIFFVolumeIdentifier method) (tomoscan.esrf.identifier.url_utils.UrlSettings method) (tomoscan.esrf.scan.edfscan.EDFTomoScan method) (tomoscan.esrf.scan.fluoscan.FluoTomoScan method) (tomoscan.esrf.scan.framereducer.edfframereducer.EDFFrameReducer method) (tomoscan.esrf.scan.framereducer.hdf5framereducer.HDF5FrameReducer method) (tomoscan.esrf.scan.fscan.FscanDataset method) (tomoscan.esrf.scan.fscan_scantypes.AeroystepScan method) (tomoscan.esrf.scan.fscan_scantypes.FScan method) (tomoscan.esrf.scan.fscan_scantypes.FScan2D method) (tomoscan.esrf.scan.fscan_scantypes.LimaTake method) (tomoscan.esrf.scan.fscan_scantypes.LoopScan method) (tomoscan.esrf.scan.fscan_scantypes.ScanTypeBase method) (tomoscan.esrf.scan.mock.MockEDF method) (tomoscan.esrf.scan.mock.MockHDF5 method) (tomoscan.esrf.scan.mock.MockNXtomo method) (tomoscan.esrf.scan.mock.ScanMock method) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan method) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan method) (tomoscan.esrf.scan.nxtomoscan.TomoFrame method) (tomoscan.esrf.volume.edfvolume.EDFVolume method) (tomoscan.esrf.volume.hdf5volume.HDF5Volume method) (tomoscan.esrf.volume.jp2kvolume.JP2KVolume method) (tomoscan.esrf.volume.mock.Scene method) (tomoscan.esrf.volume.rawvolume.RawVolume method) (tomoscan.esrf.volume.singleframebase.TIFFLikeDiskAccessor method) (tomoscan.esrf.volume.singleframebase.VolumeSingleFrameBase method) (tomoscan.esrf.volume.tiffvolume.MultiTIFFVolume method) (tomoscan.esrf.volume.tiffvolume.TIFFVolume method) (tomoscan.factory.Factory method) (tomoscan.framereducer.framereducerbase.FrameReducerBase method) (tomoscan.framereducer.method.ReduceMethod method) (tomoscan.framereducer.reducedframesinfos.ReducedFramesInfos method) (tomoscan.framereducer.target.REDUCER_TARGET method) (tomoscan.identifier.BaseIdentifier method) (tomoscan.identifier.ScanIdentifier method) (tomoscan.identifier.VolumeIdentifier method) (tomoscan.normalization.calculationmode.CalculationMode method) (tomoscan.normalization.datasetscope.DatasetScope method) (tomoscan.normalization.method.Method method) (tomoscan.normalization.methodmode.MethodMode method) (tomoscan.normalization.normalization.IntensityNormalization method) (tomoscan.progress.Progress method) (tomoscan.scanbase.TomoScanBase method) (tomoscan.series.Series method) (tomoscan.source.Source method) (tomoscan.source.SourceType method) (tomoscan.tests.datasets.GitlabProject method) (tomoscan.tests.utils.MockContext method) (tomoscan.tests.utils.NXtomoMockContext method) (tomoscan.tomoobject.TomoObject method) (tomoscan.unitsystem.ElectricCurrentSystem method) (tomoscan.unitsystem.EnergySI method) (tomoscan.unitsystem.MetricSystem method) (tomoscan.unitsystem.TimeSystem method) (tomoscan.unitsystem.Unit method) (tomoscan.utils.drac.recons_vol_mapping.DracRawDataMapping method) (tomoscan.utils.drac.recons_vol_mapping.UnitConversion method) (tomoscan.utils.geometry.BoundingBox1D method) (tomoscan.utils.geometry.BoundingBox3D method) (tomoscan.utils.hdf5.DatasetReader method) (tomoscan.validator.BasicScanValidator method) (tomoscan.validator.DarkDatasetValidator method) (tomoscan.validator.DarkEntryValidator method) (tomoscan.validator.DistanceValidator method) (tomoscan.validator.EnergyValidator method) (tomoscan.validator.FlatDatasetValidator method) (tomoscan.validator.FlatEntryValidator method) (tomoscan.validator.PixelValidator method) (tomoscan.validator.ProjectionDatasetValidator method) (tomoscan.validator.ProjectionEntryValidator method) (tomoscan.validator.ReconstructionValidator method) (tomoscan.validator.ValidatorBase method) (tomoscan.volumebase.SliceTuple method) (tomoscan.volumebase.VolumeBase method)

A

AeroystepScan (class in tomoscan.esrf.scan.fscan_scantypes) alignment_projections (tomoscan.esrf.scan.edfscan.EDFTomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan property) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan property) (tomoscan.scanbase.TomoScanBase property)

append() (tomoscan.series.Series method) axis (tomoscan.volumebase.SliceTuple attribute)

B

BaseFolderAndfilePrefixIdentifierMixIn (class in tomoscan.esrf.identifier.folderidentifier) BaseFolderIdentifierMixIn (class in tomoscan.esrf.identifier.folderidentifier) BaseIdentifier (class in tomoscan.identifier) BasicScanValidator (class in tomoscan.validator) BoundingBox1D (class in tomoscan.utils.geometry) BoundingBox3D (class in tomoscan.utils.geometry) browse_data_files() (tomoscan.esrf.volume.edfvolume.EDFVolume method) (tomoscan.esrf.volume.hdf5volume.HDF5Volume method) (tomoscan.esrf.volume.jp2kvolume.JP2KVolume method) (tomoscan.esrf.volume.rawvolume.RawVolume method) (tomoscan.esrf.volume.singleframebase.VolumeSingleFrameBase method) (tomoscan.esrf.volume.tiffvolume.MultiTIFFVolume method) (tomoscan.esrf.volume.tiffvolume.TIFFVolume method) (tomoscan.volumebase.VolumeBase method) browse_data_urls() (tomoscan.esrf.volume.edfvolume.EDFVolume method) (tomoscan.esrf.volume.hdf5volume.HDF5Volume method) (tomoscan.esrf.volume.jp2kvolume.JP2KVolume method) (tomoscan.esrf.volume.rawvolume.RawVolume method) (tomoscan.esrf.volume.singleframebase.VolumeSingleFrameBase method) (tomoscan.esrf.volume.tiffvolume.MultiTIFFVolume method) (tomoscan.esrf.volume.tiffvolume.TIFFVolume method) (tomoscan.volumebase.VolumeBase method) browse_metadata_files() (tomoscan.esrf.volume.edfvolume.EDFVolume method) (tomoscan.esrf.volume.hdf5volume.HDF5Volume method) (tomoscan.esrf.volume.jp2kvolume.JP2KVolume method) (tomoscan.esrf.volume.rawvolume.RawVolume method) (tomoscan.esrf.volume.singleframebase.VolumeSingleFrameBase method) (tomoscan.esrf.volume.tiffvolume.MultiTIFFVolume method) (tomoscan.esrf.volume.tiffvolume.TIFFVolume method) (tomoscan.volumebase.VolumeBase method)

browse_slices() (tomoscan.esrf.volume.edfvolume.EDFVolume method) (tomoscan.esrf.volume.hdf5volume.HDF5Volume method) (tomoscan.esrf.volume.jp2kvolume.JP2KVolume method) (tomoscan.esrf.volume.rawvolume.RawVolume method) (tomoscan.esrf.volume.singleframebase.VolumeSingleFrameBase method) (tomoscan.esrf.volume.tiffvolume.MultiTIFFVolume method) (tomoscan.esrf.volume.tiffvolume.TIFFVolume method) (tomoscan.volumebase.VolumeBase method) build_drac_metadata() (tomoscan.esrf.scan.edfscan.EDFTomoScan method) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan method) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan method) (tomoscan.esrf.volume.edfvolume.EDFVolume method) (tomoscan.esrf.volume.hdf5volume.HDF5Volume method) (tomoscan.esrf.volume.jp2kvolume.JP2KVolume method) (tomoscan.esrf.volume.rawvolume.RawVolume method) (tomoscan.esrf.volume.singleframebase.VolumeSingleFrameBase method) (tomoscan.esrf.volume.tiffvolume.MultiTIFFVolume method) (tomoscan.esrf.volume.tiffvolume.TIFFVolume method) (tomoscan.scanbase.TomoScanBase method) (tomoscan.tomoobject.TomoObject method) (tomoscan.volumebase.VolumeBase method)

C

calc_hexversion() (in module tomoscan.version) CalculationMode (class in tomoscan.normalization.calculationmode) check_grp_is_valid() (in module tomoscan.esrf.scan.utils) check_has_tiffle_file() (in module tomoscan.esrf.volume.tiffvolume) check_possible_issue_with_rlimit() (in module tomoscan.esrf.scan.utils) check_serie_is_consistant_frm_sample_name() (in module tomoscan.series) check_series_is_consistent_frm_sample_name() (in module tomoscan.series) check_virtual_sources_exist() (in module tomoscan.io) checkup() (tomoscan.validator.BasicScanValidator method) (tomoscan.validator.ReconstructionValidator method) clear() (tomoscan.series.Series method) clear_cache() (tomoscan.esrf.volume.edfvolume.EDFVolume method) (tomoscan.esrf.volume.hdf5volume.HDF5Volume method) (tomoscan.esrf.volume.jp2kvolume.JP2KVolume method) (tomoscan.esrf.volume.rawvolume.RawVolume method) (tomoscan.esrf.volume.singleframebase.VolumeSingleFrameBase method) (tomoscan.esrf.volume.tiffvolume.MultiTIFFVolume method) (tomoscan.esrf.volume.tiffvolume.TIFFVolume method) (tomoscan.volumebase.VolumeBase method) clear_caches() (tomoscan.esrf.scan.edfscan.EDFTomoScan method) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan method) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan method) (tomoscan.scanbase.TomoScanBase method)

clip_values (tomoscan.esrf.volume.jp2kvolume.JP2KVolume property) compare_keys() (in module tomoscan.tests.test_drac_utils) compute_reduced_darks() (tomoscan.esrf.scan.edfscan.EDFTomoScan method) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan method) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan method) (tomoscan.scanbase.TomoScanBase method) compute_reduced_flats() (tomoscan.esrf.scan.edfscan.EDFTomoScan method) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan method) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan method) (tomoscan.scanbase.TomoScanBase method) concatenate() (in module tomoscan.utils.volume) copy() (tomoscan.series.Series method) copy_h5_dict_darks_to() (in module tomoscan.esrf.scan.utils) copy_h5_dict_flats_to() (in module tomoscan.esrf.scan.utils) count() (tomoscan.series.Series method) (tomoscan.volumebase.SliceTuple method) count_time (tomoscan.framereducer.reducedframesinfos.ReducedFramesInfos property) create_scan_object() (tomoscan.factory.Factory static method) create_scan_object_frm_dict() (tomoscan.factory.Factory static method) create_scan_objects() (tomoscan.factory.Factory static method) create_tomo_object_from_identifier() (tomoscan.factory.Factory static method) create_volume() (in module tomoscan.esrf.volume.mock) cwd_context() (in module tomoscan.esrf.scan.utils)

D

DarkDatasetValidator (class in tomoscan.validator) DarkEntryValidator (class in tomoscan.validator) darks (tomoscan.esrf.scan.edfscan.EDFTomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan property) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan property) (tomoscan.scanbase.TomoScanBase property) data_file_name_generator() (tomoscan.esrf.volume.edfvolume.EDFVolume method) (tomoscan.esrf.volume.jp2kvolume.JP2KVolume method) (tomoscan.esrf.volume.singleframebase.VolumeSingleFrameBase method) (tomoscan.esrf.volume.tiffvolume.TIFFVolume method) data_file_saver_generator() (tomoscan.esrf.volume.edfvolume.EDFVolume method) (tomoscan.esrf.volume.hdf5volume.HDF5Volume method) (tomoscan.esrf.volume.jp2kvolume.JP2KVolume method) (tomoscan.esrf.volume.rawvolume.RawVolume method) (tomoscan.esrf.volume.singleframebase.VolumeSingleFrameBase method) (tomoscan.esrf.volume.tiffvolume.MultiTIFFVolume method) (tomoscan.esrf.volume.tiffvolume.TIFFVolume method) (tomoscan.volumebase.VolumeBase method) dataset_has_broken_vds() (in module tomoscan.esrf.scan.utils) DatasetReader (class in tomoscan.utils.hdf5) DatasetScope (class in tomoscan.normalization.datasetscope)

deduce_data_and_metadata_urls() (tomoscan.esrf.volume.edfvolume.EDFVolume method) (tomoscan.esrf.volume.hdf5volume.HDF5Volume method) (tomoscan.esrf.volume.jp2kvolume.JP2KVolume method) (tomoscan.esrf.volume.rawvolume.RawVolume method) (tomoscan.esrf.volume.singleframebase.VolumeSingleFrameBase method) (tomoscan.esrf.volume.tiffvolume.MultiTIFFVolume method) (tomoscan.esrf.volume.tiffvolume.TIFFVolume method) (tomoscan.volumebase.VolumeBase method) deprecated() (in module tomoscan.utils.io) deprecated_warning() (in module tomoscan.utils.io) detector_transformations (tomoscan.esrf.scan.edfscan.EDFTomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan property) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan property) (tomoscan.scanbase.TomoScanBase property) DistanceValidator (class in tomoscan.validator) docstring() (in module tomoscan.utils.decorator) download_file() (tomoscan.tests.datasets.GitlabProject method) download_folder() (tomoscan.tests.datasets.GitlabProject method) DracRawDataMapping (class in tomoscan.utils.drac.recons_vol_mapping) dtype (tomoscan.esrf.scan.fluoscan.FluoTomoScan attribute) dump_info_file() (in module tomoscan.esrf.scan.utils)

E

EDFFrameReducer (class in tomoscan.esrf.scan.framereducer.edfframereducer) EDFTomoScan (class in tomoscan.esrf.scan.edfscan) EDFTomoScanIdentifier (class in tomoscan.esrf.identifier.edfidentifier) EDFVolume (class in tomoscan.esrf.volume.edfvolume) EDFVolumeIdentifier (class in tomoscan.esrf.identifier.edfidentifier) electric_current (tomoscan.esrf.scan.edfscan.EDFTomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan property) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan property) (tomoscan.scanbase.TomoScanBase property) ElectricCurrentSystem (class in tomoscan.unitsystem) energy (tomoscan.esrf.scan.edfscan.EDFTomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan property) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan property) (tomoscan.scanbase.TomoScanBase property) EnergySI (class in tomoscan.unitsystem)

EnergyValidator (class in tomoscan.validator) equal() (tomoscan.esrf.scan.edfscan.EDFTomoScan method) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan method) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan method) (tomoscan.scanbase.TomoScanBase method) example_defined_from_str_identifier() (tomoscan.esrf.volume.edfvolume.EDFVolume static method) (tomoscan.esrf.volume.hdf5volume.HDF5Volume static method) (tomoscan.esrf.volume.jp2kvolume.JP2KVolume static method) (tomoscan.esrf.volume.rawvolume.RawVolume static method) (tomoscan.esrf.volume.singleframebase.VolumeSingleFrameBase static method) (tomoscan.esrf.volume.tiffvolume.MultiTIFFVolume static method) (tomoscan.esrf.volume.tiffvolume.TIFFVolume static method) (tomoscan.volumebase.VolumeBase static method) exposure_time (tomoscan.esrf.scan.fscan.FscanDataset property) extend() (tomoscan.series.Series method) extract_urls_from_edf() (in module tomoscan.esrf.scan.utils)

F

Factory (class in tomoscan.factory) fastMockAcquisition() (tomoscan.esrf.scan.mock.MockEDF static method) field_of_view (tomoscan.esrf.scan.edfscan.EDFTomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan property) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan property) (tomoscan.scanbase.TomoScanBase property) filter_esrf_mounting_points() (in module tomoscan.utils.io) flat_field_correction() (tomoscan.esrf.scan.edfscan.EDFTomoScan method) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan method) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan method) (tomoscan.scanbase.TomoScanBase method) flat_n (tomoscan.esrf.scan.edfscan.EDFTomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan property) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan property) (tomoscan.scanbase.TomoScanBase property) FlatDatasetValidator (class in tomoscan.validator) FlatEntryValidator (class in tomoscan.validator) flats (tomoscan.esrf.scan.edfscan.EDFTomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan property) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan property) (tomoscan.scanbase.TomoScanBase property) flatten_vol_metadata() (in module tomoscan.utils.drac.mapper) FluoTomoScan (class in tomoscan.esrf.scan.fluoscan) format_data_path_for_data() (tomoscan.esrf.volume.edfvolume.EDFVolume method) (tomoscan.esrf.volume.jp2kvolume.JP2KVolume method) (tomoscan.esrf.volume.singleframebase.VolumeSingleFrameBase method) (tomoscan.esrf.volume.tiffvolume.TIFFVolume method) format_time() (in module tomoscan.esrf.scan.fscan) FRAME_REDUCER_CLASS (tomoscan.esrf.scan.edfscan.EDFTomoScan attribute) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan attribute) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan attribute) (tomoscan.scanbase.TomoScanBase attribute)

FrameReducerBase (class in tomoscan.framereducer.framereducerbase) frames (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan property) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan property) from_absolute_reduced_frames_to_relative() (in module tomoscan.esrf.scan.utils) from_bliss_original_file_to_raw() (in module tomoscan.esrf.scan.utils) from_dict_of_str() (tomoscan.series.Series static method) from_identifier() (tomoscan.esrf.scan.edfscan.EDFTomoScan static method) (tomoscan.esrf.scan.fluoscan.FluoTomoScan static method) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan static method) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan static method) (tomoscan.esrf.volume.edfvolume.EDFVolume static method) (tomoscan.esrf.volume.hdf5volume.HDF5Volume static method) (tomoscan.esrf.volume.jp2kvolume.JP2KVolume static method) (tomoscan.esrf.volume.rawvolume.RawVolume static method) (tomoscan.esrf.volume.singleframebase.VolumeSingleFrameBase static method) (tomoscan.esrf.volume.tiffvolume.MultiTIFFVolume static method) (tomoscan.esrf.volume.tiffvolume.TIFFVolume static method) (tomoscan.scanbase.TomoScanBase static method) (tomoscan.tomoobject.TomoObject static method) (tomoscan.volumebase.VolumeBase static method) from_relative_reduced_frames_to_absolute() (in module tomoscan.esrf.scan.utils) from_sequences_to_grps() (in module tomoscan.esrf.scan.utils) FScan (class in tomoscan.esrf.scan.fscan_scantypes) FScan2D (class in tomoscan.esrf.scan.fscan_scantypes) FscanDataset (class in tomoscan.esrf.scan.fscan) FtimeScan (in module tomoscan.esrf.scan.fscan_scantypes)

G

get_all_stacks_sizes() (tomoscan.esrf.scan.fscan.FscanDataset method) get_available_threads() (in module tomoscan.esrf.volume.jp2kvolume) get_bounding_box() (tomoscan.esrf.scan.edfscan.EDFTomoScan method) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan method) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan method) (tomoscan.esrf.volume.edfvolume.EDFVolume method) (tomoscan.esrf.volume.hdf5volume.HDF5Volume method) (tomoscan.esrf.volume.jp2kvolume.JP2KVolume method) (tomoscan.esrf.volume.rawvolume.RawVolume method) (tomoscan.esrf.volume.singleframebase.VolumeSingleFrameBase method) (tomoscan.esrf.volume.tiffvolume.MultiTIFFVolume method) (tomoscan.esrf.volume.tiffvolume.TIFFVolume method) (tomoscan.scanbase.TomoScanBase method) (tomoscan.tomoobject.TomoObject method) (tomoscan.volumebase.VolumeBase method) get_closest_SR_current() (tomoscan.esrf.scan.framereducer.edfframereducer.EDFFrameReducer static method) get_compacted_dataslices() (in module tomoscan.esrf.scan.utils) get_darks_url() (tomoscan.esrf.scan.edfscan.EDFTomoScan static method) get_data() (in module tomoscan.esrf.scan.utils) get_data_path_pattern_for_data() (tomoscan.esrf.volume.edfvolume.EDFVolume method) (tomoscan.esrf.volume.jp2kvolume.JP2KVolume method) (tomoscan.esrf.volume.singleframebase.VolumeSingleFrameBase method) (tomoscan.esrf.volume.tiffvolume.TIFFVolume method) get_data_sources() (in module tomoscan.utils.hdf5) get_dataset() (tomoscan.tests.datasets.GitlabProject method) get_datasets_linked_to_vds() (in module tomoscan.esrf.scan.utils) get_datetime() (in module tomoscan.esrf.scan.fscan) get_default_data_path_for_volume() (in module tomoscan.esrf.volume.hdf5volume) get_files_from_pattern() (in module tomoscan.esrf.scan.utils) get_first_hdf5_entry() (in module tomoscan.esrf.scan.h5utils) get_flats_url() (tomoscan.esrf.scan.edfscan.EDFTomoScan static method) get_h5_value() (in module tomoscan.esrf.scan.fscan_scantypes) (in module tomoscan.esrf.scan.h5utils) get_h5obj_value() (in module tomoscan.esrf.scan.h5utils) get_hdf5_dataset_shape() (in module tomoscan.esrf.scan.h5utils) get_identifier() (tomoscan.esrf.scan.edfscan.EDFTomoScan method) (tomoscan.esrf.scan.fluoscan.FluoTomoScan method) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan method) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan method) (tomoscan.esrf.volume.edfvolume.EDFVolume method) (tomoscan.esrf.volume.hdf5volume.HDF5Volume method) (tomoscan.esrf.volume.jp2kvolume.JP2KVolume method) (tomoscan.esrf.volume.rawvolume.RawVolume method) (tomoscan.esrf.volume.singleframebase.VolumeSingleFrameBase method) (tomoscan.esrf.volume.tiffvolume.MultiTIFFVolume method) (tomoscan.esrf.volume.tiffvolume.TIFFVolume method) (tomoscan.scanbase.TomoScanBase method) (tomoscan.tomoobject.TomoObject method) (tomoscan.volumebase.VolumeBase method) get_lfs_extensions() (tomoscan.tests.datasets.GitlabProject method) get_metadata() (tomoscan.esrf.scan.fscan_scantypes.AeroystepScan method) (tomoscan.esrf.scan.fscan_scantypes.FScan method) (tomoscan.esrf.scan.fscan_scantypes.FScan2D method) (tomoscan.esrf.scan.fscan_scantypes.LimaTake method) (tomoscan.esrf.scan.fscan_scantypes.LoopScan method) (tomoscan.esrf.scan.fscan_scantypes.ScanTypeBase method) get_min_max() (tomoscan.esrf.volume.edfvolume.EDFVolume method) (tomoscan.esrf.volume.hdf5volume.HDF5Volume method) (tomoscan.esrf.volume.jp2kvolume.JP2KVolume method) (tomoscan.esrf.volume.rawvolume.RawVolume method) (tomoscan.esrf.volume.singleframebase.VolumeSingleFrameBase method) (tomoscan.esrf.volume.tiffvolume.MultiTIFFVolume method) (tomoscan.esrf.volume.tiffvolume.TIFFVolume method) (tomoscan.volumebase.VolumeBase method) get_min_max_values() (tomoscan.esrf.volume.edfvolume.EDFVolume method) (tomoscan.esrf.volume.hdf5volume.HDF5Volume method) (tomoscan.esrf.volume.jp2kvolume.JP2KVolume method) (tomoscan.esrf.volume.rawvolume.RawVolume method) (tomoscan.esrf.volume.singleframebase.VolumeSingleFrameBase method) (tomoscan.esrf.volume.tiffvolume.MultiTIFFVolume method) (tomoscan.esrf.volume.tiffvolume.TIFFVolume method) (tomoscan.volumebase.VolumeBase method) get_most_common_extension() (in module tomoscan.esrf.volume.utils) get_n_series() (in module tomoscan.esrf.scan.utils)

get_nexus_paths() (in module tomoscan.esrf.scan.nxtomoscan) get_originals() (tomoscan.esrf.scan.framereducer.edfframereducer.EDFFrameReducer method) get_parameters_frm_par_or_info() (in module tomoscan.esrf.scan.utils) get_proj_angle_url() (tomoscan.esrf.scan.edfscan.EDFTomoScan method) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan method) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan method) (tomoscan.scanbase.TomoScanBase method) get_proj_urls() (tomoscan.esrf.scan.edfscan.EDFTomoScan static method) get_projections_intensity_monitor() (tomoscan.esrf.scan.edfscan.EDFTomoScan method) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan method) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan method) (tomoscan.scanbase.TomoScanBase method) get_relative_file() (tomoscan.esrf.scan.edfscan.EDFTomoScan method) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan method) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan method) (tomoscan.scanbase.TomoScanBase method) get_sample_detector_distance() (tomoscan.esrf.scan.edfscan.EDFTomoScan method) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan method) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan method) (tomoscan.scanbase.TomoScanBase method) get_scan_metadata() (in module tomoscan.esrf.scan.fscan_scantypes) get_series() (tomoscan.esrf.scan.framereducer.hdf5framereducer.HDF5FrameReducer method) get_series_slice() (in module tomoscan.esrf.scan.utils) get_sinogram() (tomoscan.esrf.scan.edfscan.EDFTomoScan method) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan method) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan method) (tomoscan.scanbase.TomoScanBase method) get_slice() (tomoscan.esrf.volume.edfvolume.EDFVolume method) (tomoscan.esrf.volume.hdf5volume.HDF5Volume method) (tomoscan.esrf.volume.jp2kvolume.JP2KVolume method) (tomoscan.esrf.volume.rawvolume.RawVolume method) (tomoscan.esrf.volume.singleframebase.VolumeSingleFrameBase method) (tomoscan.esrf.volume.tiffvolume.MultiTIFFVolume method) (tomoscan.esrf.volume.tiffvolume.TIFFVolume method) (tomoscan.volumebase.VolumeBase method) get_slices() (tomoscan.esrf.volume.edfvolume.EDFVolume method) (tomoscan.esrf.volume.hdf5volume.HDF5Volume method) (tomoscan.esrf.volume.jp2kvolume.JP2KVolume method) (tomoscan.esrf.volume.rawvolume.RawVolume method) (tomoscan.esrf.volume.singleframebase.VolumeSingleFrameBase method) (tomoscan.esrf.volume.tiffvolume.MultiTIFFVolume method) (tomoscan.esrf.volume.tiffvolume.TIFFVolume method) (tomoscan.volumebase.VolumeBase method) get_stack_size() (tomoscan.esrf.scan.fscan.FscanDataset method) get_string() (in module tomoscan.esrf.scan.fscan) get_subvolume_shape() (in module tomoscan.utils.geometry) get_swmr_mode() (in module tomoscan.io) get_title() (in module tomoscan.esrf.scan.fscan_scantypes) get_unique_files_linked() (in module tomoscan.esrf.scan.utils) get_valid_entries() (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan static method) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan static method) get_virtual_sources() (tomoscan.esrf.scan.fscan.FscanDataset method) get_volume_output_file_name() (tomoscan.esrf.scan.edfscan.EDFTomoScan static method) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan static method) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan static method) (tomoscan.scanbase.TomoScanBase static method) get_volume_shape() (tomoscan.esrf.volume.edfvolume.EDFVolume method) (tomoscan.esrf.volume.hdf5volume.HDF5Volume method) (tomoscan.esrf.volume.jp2kvolume.JP2KVolume method) (tomoscan.esrf.volume.rawvolume.RawVolume method) (tomoscan.esrf.volume.singleframebase.VolumeSingleFrameBase method) (tomoscan.esrf.volume.tiffvolume.MultiTIFFVolume method) (tomoscan.esrf.volume.tiffvolume.TIFFVolume method) (tomoscan.volumebase.VolumeBase method) GitlabProject (class in tomoscan.tests.datasets) group_size (tomoscan.esrf.scan.edfscan.EDFTomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan property) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan property) (tomoscan.scanbase.TomoScanBase property) group_slices_by_axis() (in module tomoscan.esrf.volume.utils) grp_is_complete() (in module tomoscan.esrf.scan.utils) guess_detector_name() (in module tomoscan.esrf.scan.fscan) guess_hdf5_volume_data_paths() (in module tomoscan.esrf.volume.utils) guess_index_frm_file_name() (tomoscan.esrf.scan.edfscan.EDFTomoScan static method) guess_volumes() (in module tomoscan.esrf.volume.utils)

H

HDF5FrameReducer (class in tomoscan.esrf.scan.framereducer.hdf5framereducer) HDF5TomoScan (class in tomoscan.esrf.scan.nxtomoscan) HDF5TomoScanIdentifier (class in tomoscan.esrf.identifier.hdf5Identifier)

HDF5Volume (class in tomoscan.esrf.volume.hdf5volume) HDF5VolumeIdentifier (class in tomoscan.esrf.identifier.hdf5Identifier) header (tomoscan.esrf.volume.edfvolume.EDFVolume property)

I

index (tomoscan.volumebase.SliceTuple attribute) index() (tomoscan.series.Series method) insert() (tomoscan.series.Series method) instrument_name (tomoscan.esrf.scan.edfscan.EDFTomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan property) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan property) (tomoscan.scanbase.TomoScanBase property) IntensityNormalization (class in tomoscan.normalization.normalization) is_a_proj_path() (tomoscan.esrf.scan.edfscan.EDFTomoScan static method) is_abort() (tomoscan.esrf.scan.edfscan.EDFTomoScan method) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan method) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan method) (tomoscan.scanbase.TomoScanBase method)

is_dataset_entry() (in module tomoscan.esrf.scan.fscan) is_tomoscan_dir() (tomoscan.esrf.scan.edfscan.EDFTomoScan static method) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan static method) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan static method) (tomoscan.factory.Factory static method) (tomoscan.scanbase.TomoScanBase static method) is_valid_for_reconstruction() (in module tomoscan.validator)

J

join_path() (in module tomoscan.esrf.identifier.url_utils) join_query() (in module tomoscan.esrf.identifier.url_utils)

join_string() (in module tomoscan.esrf.identifier.url_utils) JP2KVolume (class in tomoscan.esrf.volume.jp2kvolume) JP2KVolumeIdentifier (class in tomoscan.esrf.identifier.jp2kidentifier)

L

LimaTake (class in tomoscan.esrf.scan.fscan_scantypes) list_datasets() (in module tomoscan.esrf.scan.fscan) list_datasets_with_attributes() (in module tomoscan.esrf.scan.fscan) load_chunk() (tomoscan.esrf.volume.edfvolume.EDFVolume method) (tomoscan.esrf.volume.hdf5volume.HDF5Volume method) (tomoscan.esrf.volume.jp2kvolume.JP2KVolume method) (tomoscan.esrf.volume.rawvolume.RawVolume method) (tomoscan.esrf.volume.singleframebase.VolumeSingleFrameBase method) (tomoscan.esrf.volume.tiffvolume.MultiTIFFVolume method) (tomoscan.esrf.volume.tiffvolume.TIFFVolume method) (tomoscan.volumebase.VolumeBase method) load_data() (tomoscan.esrf.volume.edfvolume.EDFVolume method) (tomoscan.esrf.volume.hdf5volume.HDF5Volume method) (tomoscan.esrf.volume.jp2kvolume.JP2KVolume method) (tomoscan.esrf.volume.rawvolume.RawVolume method) (tomoscan.esrf.volume.singleframebase.VolumeSingleFrameBase method) (tomoscan.esrf.volume.tiffvolume.MultiTIFFVolume method) (tomoscan.esrf.volume.tiffvolume.TIFFVolume method) (tomoscan.volumebase.VolumeBase method) load_data_serie() (tomoscan.esrf.scan.framereducer.hdf5framereducer.HDF5FrameReducer method) load_frame() (tomoscan.esrf.volume.edfvolume.EDFVolume method) (tomoscan.esrf.volume.jp2kvolume.JP2KVolume method) (tomoscan.esrf.volume.singleframebase.VolumeSingleFrameBase method) (tomoscan.esrf.volume.tiffvolume.TIFFVolume method)

load_from_dict() (tomoscan.esrf.scan.edfscan.EDFTomoScan method) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan method) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan method) (tomoscan.scanbase.TomoScanBase method) load_metadata() (tomoscan.esrf.volume.edfvolume.EDFVolume method) (tomoscan.esrf.volume.hdf5volume.HDF5Volume method) (tomoscan.esrf.volume.jp2kvolume.JP2KVolume method) (tomoscan.esrf.volume.rawvolume.RawVolume method) (tomoscan.esrf.volume.singleframebase.VolumeSingleFrameBase method) (tomoscan.esrf.volume.tiffvolume.MultiTIFFVolume method) (tomoscan.esrf.volume.tiffvolume.TIFFVolume method) (tomoscan.volumebase.VolumeBase method) load_reduced_darks() (tomoscan.esrf.scan.edfscan.EDFTomoScan method) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan method) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan method) (tomoscan.scanbase.TomoScanBase method) load_reduced_flats() (tomoscan.esrf.scan.edfscan.EDFTomoScan method) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan method) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan method) (tomoscan.scanbase.TomoScanBase method) LoopScan (class in tomoscan.esrf.scan.fscan_scantypes)

M

machine_electric_current (tomoscan.framereducer.reducedframesinfos.ReducedFramesInfos property) magnification (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan property) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan property) map_nabu_keys_to_drac() (in module tomoscan.utils.drac.mapper) map_urls_on_scan_range() (tomoscan.esrf.scan.edfscan.EDFTomoScan static method) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan static method) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan static method) (tomoscan.scanbase.TomoScanBase static method) Method (class in tomoscan.normalization.method) MethodMode (class in tomoscan.normalization.methodmode) MetricSystem (class in tomoscan.unitsystem) MockContext (class in tomoscan.tests.utils) MockEDF (class in tomoscan.esrf.scan.mock) MockHDF5 (class in tomoscan.esrf.scan.mock) MockNXtomo (class in tomoscan.esrf.scan.mock) mockReconstruction() (tomoscan.esrf.scan.mock.MockEDF static method) mockScan() (tomoscan.esrf.scan.mock.MockEDF static method) module tomoscan tomoscan.esrf tomoscan.esrf.edfscan tomoscan.esrf.hdf5scan tomoscan.esrf.identifier tomoscan.esrf.identifier.edfidentifier tomoscan.esrf.identifier.folderidentifier tomoscan.esrf.identifier.hdf5Identifier tomoscan.esrf.identifier.jp2kidentifier tomoscan.esrf.identifier.rawidentifier tomoscan.esrf.identifier.tiffidentifier tomoscan.esrf.identifier.url_utils tomoscan.esrf.mock tomoscan.esrf.scan tomoscan.esrf.scan.edfscan tomoscan.esrf.scan.fluoscan tomoscan.esrf.scan.framereducer tomoscan.esrf.scan.framereducer.edfframereducer tomoscan.esrf.scan.framereducer.hdf5framereducer tomoscan.esrf.scan.fscan tomoscan.esrf.scan.fscan_scantypes tomoscan.esrf.scan.h5utils tomoscan.esrf.scan.hdf5scan tomoscan.esrf.scan.mock tomoscan.esrf.scan.nxtomoscan tomoscan.esrf.scan.utils tomoscan.esrf.utils tomoscan.esrf.volume tomoscan.esrf.volume.edfvolume tomoscan.esrf.volume.hdf5volume tomoscan.esrf.volume.jp2kvolume tomoscan.esrf.volume.mock tomoscan.esrf.volume.rawvolume tomoscan.esrf.volume.singleframebase tomoscan.esrf.volume.tiffvolume tomoscan.esrf.volume.utils tomoscan.factory tomoscan.framereducer tomoscan.framereducer.framereducerbase tomoscan.framereducer.method tomoscan.framereducer.reducedframesinfos tomoscan.framereducer.target tomoscan.framereducerbase tomoscan.identifier tomoscan.io tomoscan.nexus tomoscan.nexus.paths tomoscan.nexus.paths.nxdetector tomoscan.nexus.paths.nxinstrument tomoscan.nexus.paths.nxmonitor tomoscan.nexus.paths.nxsample tomoscan.nexus.paths.nxsource tomoscan.nexus.paths.nxtomo tomoscan.nexus.paths.nxtransformations tomoscan.nexus.utils tomoscan.normalization tomoscan.normalization.calculationmode tomoscan.normalization.datasetscope tomoscan.normalization.method tomoscan.normalization.methodmode tomoscan.normalization.normalization tomoscan.progress tomoscan.scanbase tomoscan.scanfactory tomoscan.serie tomoscan.series tomoscan.source tomoscan.test tomoscan.tests tomoscan.tests.datasets tomoscan.tests.test_drac_utils tomoscan.tests.test_io tomoscan.tests.test_progress tomoscan.tests.test_version tomoscan.tests.utils tomoscan.tomoobject tomoscan.unitsystem tomoscan.unitsystem.electriccurrentsystem tomoscan.unitsystem.energysystem tomoscan.unitsystem.metricsystem tomoscan.unitsystem.timesystem tomoscan.unitsystem.unit tomoscan.unitsystem.voltagesystem tomoscan.utils tomoscan.utils.decorator tomoscan.utils.drac tomoscan.utils.drac.mapper tomoscan.utils.drac.recons_vol_mapping tomoscan.utils.geometry tomoscan.utils.hdf5 tomoscan.utils.io tomoscan.utils.volume tomoscan.validator tomoscan.version tomoscan.volumebase

MultiTIFFVolume (class in tomoscan.esrf.volume.tiffvolume) MultiTiffVolumeIdentifier (class in tomoscan.esrf.identifier.tiffidentifier)

N

node_is_nxtomo() (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan static method) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan static method) normalize_chebyshev_2D() (in module tomoscan.normalization.normalization)

normalize_lsqr_spline_2D() (in module tomoscan.normalization.normalization) NXtomoMockContext (class in tomoscan.tests.utils) NXtomoScan (class in tomoscan.esrf.scan.nxtomoscan) NXtomoScanIdentifier (class in tomoscan.esrf.identifier.hdf5Identifier)

P

parse_lfs_extensions() (tomoscan.tests.datasets.GitlabProject static method) path (tomoscan.esrf.scan.edfscan.EDFTomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan property) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan property) (tomoscan.scanbase.TomoScanBase property) pixel_size (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan property) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan property) PixelValidator (class in tomoscan.validator) pop() (tomoscan.series.Series method) position (tomoscan.esrf.volume.edfvolume.EDFVolume property) (tomoscan.esrf.volume.hdf5volume.HDF5Volume property) (tomoscan.esrf.volume.jp2kvolume.JP2KVolume property) (tomoscan.esrf.volume.rawvolume.RawVolume property) (tomoscan.esrf.volume.singleframebase.VolumeSingleFrameBase property) (tomoscan.esrf.volume.tiffvolume.MultiTIFFVolume property) (tomoscan.esrf.volume.tiffvolume.TIFFVolume property) (tomoscan.volumebase.VolumeBase property)

Progress (class in tomoscan.progress) projection_angular_range_to_indices() (in module tomoscan.scanbase) ProjectionDatasetValidator (class in tomoscan.validator) ProjectionEntryValidator (class in tomoscan.validator) projections (tomoscan.esrf.scan.edfscan.EDFTomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan property) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan property) (tomoscan.scanbase.TomoScanBase property) projections_angles_to_indices() (in module tomoscan.scanbase) projections_compacted (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan property) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan property)

R

RAW_DARK_RE (tomoscan.esrf.scan.framereducer.edfframereducer.EDFFrameReducer attribute) RAW_FLAT_RE (tomoscan.esrf.scan.framereducer.edfframereducer.EDFFrameReducer attribute) RawVolume (class in tomoscan.esrf.volume.rawvolume) RawVolumeIdentifier (class in tomoscan.esrf.identifier.rawidentifier) ReconstructionValidator (class in tomoscan.validator) recreate_object() (tomoscan.esrf.identifier.edfidentifier.EDFTomoScanIdentifier method) (tomoscan.esrf.identifier.edfidentifier.EDFVolumeIdentifier method) (tomoscan.esrf.identifier.hdf5Identifier.HDF5TomoScanIdentifier method) (tomoscan.esrf.identifier.hdf5Identifier.HDF5VolumeIdentifier method) (tomoscan.esrf.identifier.hdf5Identifier.NXtomoScanIdentifier method) (tomoscan.esrf.identifier.jp2kidentifier.JP2KVolumeIdentifier method) (tomoscan.esrf.identifier.rawidentifier.RawVolumeIdentifier method) (tomoscan.esrf.identifier.tiffidentifier.MultiTiffVolumeIdentifier method) (tomoscan.esrf.identifier.tiffidentifier.TIFFVolumeIdentifier method) (tomoscan.identifier.BaseIdentifier method) (tomoscan.identifier.ScanIdentifier method) (tomoscan.identifier.VolumeIdentifier method) ReducedFramesInfos (class in tomoscan.framereducer.reducedframesinfos) ReduceMethod (class in tomoscan.framereducer.method)

REDUCER_TARGET (class in tomoscan.framereducer.target) remove() (tomoscan.series.Series method) remove_existing_data_files() (tomoscan.esrf.volume.edfvolume.EDFVolume method) (tomoscan.esrf.volume.jp2kvolume.JP2KVolume method) (tomoscan.esrf.volume.singleframebase.VolumeSingleFrameBase method) (tomoscan.esrf.volume.tiffvolume.TIFFVolume method) remove_raw_files() (tomoscan.esrf.scan.framereducer.edfframereducer.EDFFrameReducer method) rescale_data() (in module tomoscan.utils.volume) retrieve_information() (tomoscan.esrf.scan.edfscan.EDFTomoScan static method) reverse() (tomoscan.series.Series method) run() (tomoscan.validator.DarkDatasetValidator method) (tomoscan.validator.DarkEntryValidator method) (tomoscan.validator.DistanceValidator method) (tomoscan.validator.EnergyValidator method) (tomoscan.validator.FlatDatasetValidator method) (tomoscan.validator.FlatEntryValidator method) (tomoscan.validator.PixelValidator method) (tomoscan.validator.ProjectionDatasetValidator method) (tomoscan.validator.ProjectionEntryValidator method)

S

sample_detector_distance (tomoscan.esrf.scan.edfscan.EDFTomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan property) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan property) (tomoscan.scanbase.TomoScanBase property) sample_name (tomoscan.esrf.scan.edfscan.EDFTomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan property) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan property) (tomoscan.scanbase.TomoScanBase property) save() (tomoscan.esrf.volume.edfvolume.EDFVolume method) (tomoscan.esrf.volume.hdf5volume.HDF5Volume method) (tomoscan.esrf.volume.jp2kvolume.JP2KVolume method) (tomoscan.esrf.volume.rawvolume.RawVolume method) (tomoscan.esrf.volume.singleframebase.VolumeSingleFrameBase method) (tomoscan.esrf.volume.tiffvolume.MultiTIFFVolume method) (tomoscan.esrf.volume.tiffvolume.TIFFVolume method) (tomoscan.volumebase.VolumeBase method) save_data() (tomoscan.esrf.volume.edfvolume.EDFVolume method) (tomoscan.esrf.volume.hdf5volume.HDF5Volume method) (tomoscan.esrf.volume.jp2kvolume.JP2KVolume method) (tomoscan.esrf.volume.rawvolume.RawVolume method) (tomoscan.esrf.volume.singleframebase.VolumeSingleFrameBase method) (tomoscan.esrf.volume.tiffvolume.MultiTIFFVolume method) (tomoscan.esrf.volume.tiffvolume.TIFFVolume method) (tomoscan.volumebase.VolumeBase method) save_frame() (tomoscan.esrf.volume.edfvolume.EDFVolume method) (tomoscan.esrf.volume.jp2kvolume.JP2KVolume method) (tomoscan.esrf.volume.singleframebase.VolumeSingleFrameBase method) (tomoscan.esrf.volume.tiffvolume.TIFFVolume method) save_metadata() (tomoscan.esrf.volume.edfvolume.EDFVolume method) (tomoscan.esrf.volume.hdf5volume.HDF5Volume method) (tomoscan.esrf.volume.jp2kvolume.JP2KVolume method) (tomoscan.esrf.volume.rawvolume.RawVolume method) (tomoscan.esrf.volume.singleframebase.VolumeSingleFrameBase method) (tomoscan.esrf.volume.tiffvolume.MultiTIFFVolume method) (tomoscan.esrf.volume.tiffvolume.TIFFVolume method) (tomoscan.volumebase.VolumeBase method) save_reduced_darks() (tomoscan.esrf.scan.edfscan.EDFTomoScan method) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan method) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan method) (tomoscan.scanbase.TomoScanBase method) save_reduced_flats() (tomoscan.esrf.scan.edfscan.EDFTomoScan method) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan method) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan method) (tomoscan.scanbase.TomoScanBase method) Scan() (in module tomoscan.esrf.scan.fscan_scantypes) ScanIdentifier (class in tomoscan.identifier) ScanMock (class in tomoscan.esrf.scan.mock) ScanTypeBase (class in tomoscan.esrf.scan.fscan_scantypes)

Scene (class in tomoscan.esrf.volume.mock) select() (tomoscan.esrf.volume.edfvolume.EDFVolume static method) (tomoscan.esrf.volume.hdf5volume.HDF5Volume static method) (tomoscan.esrf.volume.jp2kvolume.JP2KVolume static method) (tomoscan.esrf.volume.rawvolume.RawVolume static method) (tomoscan.esrf.volume.singleframebase.VolumeSingleFrameBase static method) (tomoscan.esrf.volume.tiffvolume.MultiTIFFVolume static method) (tomoscan.esrf.volume.tiffvolume.TIFFVolume static method) (tomoscan.volumebase.VolumeBase static method) sequence_name (tomoscan.esrf.scan.edfscan.EDFTomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan property) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan property) (tomoscan.scanbase.TomoScanBase property) sequences_to_series_from_sample_name() (in module tomoscan.series) serie_is_complete_from_group_size() (in module tomoscan.series) Series (class in tomoscan.series) series_is_complete_from_group_size() (in module tomoscan.series) set_check_behavior() (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan method) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan method) setup_multithread_encoding() (tomoscan.esrf.volume.jp2kvolume.JP2KVolume static method) short_description() (tomoscan.esrf.identifier.edfidentifier.EDFTomoScanIdentifier method) (tomoscan.esrf.identifier.edfidentifier.EDFVolumeIdentifier method) (tomoscan.esrf.identifier.hdf5Identifier.HDF5TomoScanIdentifier method) (tomoscan.esrf.identifier.hdf5Identifier.HDF5VolumeIdentifier method) (tomoscan.esrf.identifier.hdf5Identifier.NXtomoScanIdentifier method) (tomoscan.esrf.identifier.jp2kidentifier.JP2KVolumeIdentifier method) (tomoscan.esrf.identifier.rawidentifier.RawVolumeIdentifier method) (tomoscan.esrf.identifier.tiffidentifier.MultiTiffVolumeIdentifier method) (tomoscan.esrf.identifier.tiffidentifier.TIFFVolumeIdentifier method) (tomoscan.identifier.BaseIdentifier method) (tomoscan.identifier.ScanIdentifier method) (tomoscan.identifier.VolumeIdentifier method) skip_existing_data_files_removal (tomoscan.esrf.volume.edfvolume.EDFVolume property) (tomoscan.esrf.volume.jp2kvolume.JP2KVolume property) (tomoscan.esrf.volume.singleframebase.VolumeSingleFrameBase property) (tomoscan.esrf.volume.tiffvolume.TIFFVolume property) SliceTuple (class in tomoscan.volumebase) sort() (tomoscan.series.Series method) Source (class in tomoscan.source) source_sample_distance (tomoscan.esrf.scan.edfscan.EDFTomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan property) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan property) (tomoscan.scanbase.TomoScanBase property) SourceType (class in tomoscan.source) split_path() (in module tomoscan.esrf.identifier.url_utils) split_query() (in module tomoscan.esrf.identifier.url_utils) splitted_flat_series (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan property) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan property)

T

test_advancement() (in module tomoscan.tests.test_progress) test_nabu_and_drac_compatibility() (in module tomoscan.tests.test_drac_utils) test_progress() (in module tomoscan.tests.test_progress) test_vds() (in module tomoscan.tests.test_io) test_version() (in module tomoscan.tests.test_version) TIFFLikeDiskAccessor (class in tomoscan.esrf.volume.singleframebase) TIFFVolume (class in tomoscan.esrf.volume.tiffvolume) TIFFVolumeIdentifier (class in tomoscan.esrf.identifier.tiffidentifier) TimeSystem (class in tomoscan.unitsystem) to_dict() (tomoscan.esrf.scan.edfscan.EDFTomoScan method) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan method) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan method) (tomoscan.scanbase.TomoScanBase method) to_dict_of_str() (tomoscan.series.Series method) to_drac() (tomoscan.utils.drac.recons_vol_mapping.DracRawDataMapping method) tomo_n (tomoscan.esrf.scan.edfscan.EDFTomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan property) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan property) (tomoscan.scanbase.TomoScanBase property) TomoFrame (class in tomoscan.esrf.scan.nxtomoscan) TomoObject (class in tomoscan.tomoobject) tomoscan module tomoscan.esrf module tomoscan.esrf.edfscan module tomoscan.esrf.hdf5scan module tomoscan.esrf.identifier module tomoscan.esrf.identifier.edfidentifier module tomoscan.esrf.identifier.folderidentifier module tomoscan.esrf.identifier.hdf5Identifier module tomoscan.esrf.identifier.jp2kidentifier module tomoscan.esrf.identifier.rawidentifier module tomoscan.esrf.identifier.tiffidentifier module tomoscan.esrf.identifier.url_utils module tomoscan.esrf.mock module tomoscan.esrf.scan module tomoscan.esrf.scan.edfscan module tomoscan.esrf.scan.fluoscan module tomoscan.esrf.scan.framereducer module tomoscan.esrf.scan.framereducer.edfframereducer module tomoscan.esrf.scan.framereducer.hdf5framereducer module tomoscan.esrf.scan.fscan module tomoscan.esrf.scan.fscan_scantypes module tomoscan.esrf.scan.h5utils module tomoscan.esrf.scan.hdf5scan module tomoscan.esrf.scan.mock module tomoscan.esrf.scan.nxtomoscan module tomoscan.esrf.scan.utils module tomoscan.esrf.utils module tomoscan.esrf.volume module tomoscan.esrf.volume.edfvolume module tomoscan.esrf.volume.hdf5volume module tomoscan.esrf.volume.jp2kvolume module tomoscan.esrf.volume.mock module tomoscan.esrf.volume.rawvolume module tomoscan.esrf.volume.singleframebase module tomoscan.esrf.volume.tiffvolume module tomoscan.esrf.volume.utils module tomoscan.factory module tomoscan.framereducer module tomoscan.framereducer.framereducerbase module tomoscan.framereducer.method module tomoscan.framereducer.reducedframesinfos module tomoscan.framereducer.target module tomoscan.framereducerbase module tomoscan.identifier module

tomoscan.io module tomoscan.nexus module tomoscan.nexus.paths module tomoscan.nexus.paths.nxdetector module tomoscan.nexus.paths.nxinstrument module tomoscan.nexus.paths.nxmonitor module tomoscan.nexus.paths.nxsample module tomoscan.nexus.paths.nxsource module tomoscan.nexus.paths.nxtomo module tomoscan.nexus.paths.nxtransformations module tomoscan.nexus.utils module tomoscan.normalization module tomoscan.normalization.calculationmode module tomoscan.normalization.datasetscope module tomoscan.normalization.method module tomoscan.normalization.methodmode module tomoscan.normalization.normalization module tomoscan.progress module tomoscan.scanbase module tomoscan.scanfactory module tomoscan.serie module tomoscan.series module tomoscan.source module tomoscan.test module tomoscan.tests module tomoscan.tests.datasets module tomoscan.tests.test_drac_utils module tomoscan.tests.test_io module tomoscan.tests.test_progress module tomoscan.tests.test_version module tomoscan.tests.utils module tomoscan.tomoobject module tomoscan.unitsystem module tomoscan.unitsystem.electriccurrentsystem module tomoscan.unitsystem.energysystem module tomoscan.unitsystem.metricsystem module tomoscan.unitsystem.timesystem module tomoscan.unitsystem.unit module tomoscan.unitsystem.voltagesystem module tomoscan.utils module tomoscan.utils.decorator module tomoscan.utils.drac module tomoscan.utils.drac.mapper module tomoscan.utils.drac.recons_vol_mapping module tomoscan.utils.geometry module tomoscan.utils.hdf5 module tomoscan.utils.io module tomoscan.utils.volume module tomoscan.validator module tomoscan.version module tomoscan.volumebase module TomoScanBase (class in tomoscan.scanbase) type (tomoscan.esrf.scan.edfscan.EDFTomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan property) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan property) (tomoscan.scanbase.TomoScanBase property)

U

Unit (class in tomoscan.unitsystem) UnitConversion (class in tomoscan.utils.drac.recons_vol_mapping) update() (tomoscan.esrf.scan.edfscan.EDFTomoScan method) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan method) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan method) (tomoscan.scanbase.TomoScanBase method)

update_metadata() (in module tomoscan.utils.volume) UrlSettings (class in tomoscan.esrf.identifier.url_utils)

V

ValidatorBase (class in tomoscan.validator) VolumeBase (class in tomoscan.volumebase) VolumeIdentifier (class in tomoscan.identifier) VolumeSingleFrameBase (class in tomoscan.esrf.volume.singleframebase) voxel_size (tomoscan.esrf.volume.edfvolume.EDFVolume property) (tomoscan.esrf.volume.hdf5volume.HDF5Volume property) (tomoscan.esrf.volume.jp2kvolume.JP2KVolume property) (tomoscan.esrf.volume.rawvolume.RawVolume property) (tomoscan.esrf.volume.singleframebase.VolumeSingleFrameBase property) (tomoscan.esrf.volume.tiffvolume.MultiTIFFVolume property) (tomoscan.esrf.volume.tiffvolume.TIFFVolume property) (tomoscan.volumebase.VolumeBase property)

W

wget_file() (in module tomoscan.tests.datasets)

X

x_flipped (tomoscan.esrf.scan.edfscan.EDFTomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan property) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan property) (tomoscan.scanbase.TomoScanBase property) x_pixel_size (tomoscan.esrf.scan.edfscan.EDFTomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan property) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan property)

x_rotation_axis_pixel_position (tomoscan.esrf.scan.edfscan.EDFTomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan property) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan property) (tomoscan.scanbase.TomoScanBase property)

Y

y_flipped (tomoscan.esrf.scan.edfscan.EDFTomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan property) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan property) (tomoscan.scanbase.TomoScanBase property)

y_pixel_size (tomoscan.esrf.scan.edfscan.EDFTomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan property) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan property)