tomoscan.esrf.scan.utils

module dedicated to esrf scans utils

Functions

check_grp_is_valid(scans)
check_possible_issue_with_rlimit(url[, ...])	check that the provided url does not contain more external file than (ulimit - delta_ulimit).
copy_h5_dict_darks_to(scan, darks_url[, ...])	param TomwerScanBase scan target to copy darks
copy_h5_dict_flats_to(scan, flats_url[, ...])	param TomwerScanBase scan target to copy darks
cwd_context([new_cwd])
dataset_has_broken_vds(url[, raise_error, ...])	check that the provided url is not a VDS with broken links.
dump_info_file(file_path, tomo_n, ...)
extract_urls_from_edf(file_, start_index[, ...])	return one DataUrl for each frame contain in file_
from_absolute_reduced_frames_to_relative(...)
from_bliss_original_file_to_raw(...)	convert NXtomo 'bliss_original_files' to drac raw parameter (folder containing the raw) without some possible noise added by 'realpath' like '/mnt/multipath-shares' or '/gpfs/easy'
from_relative_reduced_frames_to_absolute(...)
from_sequences_to_grps(scans)	rtype tuple
get_compacted_dataslices(urls[, ...])	Regroup urls to get the data more efficiently.
get_data(url)
get_datasets_linked_to_vds(url)	Return set([file-path, data_path]) linked to the provided url
get_files_from_pattern(file_pattern, ...)	return: all files using a {pattern} to store the index.
get_n_series(image_key_values, image_key_type)	Return the number of series of an image_key.
get_parameters_frm_par_or_info(file_)	Create a dictionary from the file with the information name as keys and their values as values
get_series_slice(image_key_values, ...)	return the DataUrl corresponding to the to the serie at series_index for the type of image_key_type.
get_unique_files_linked(url)	Return the list of unique files linked to the DataUrl without depth limitation
grp_is_complete(scans)	rtype bool