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2.3

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  • Tutorials
  • API Reference
  • User guide
  • Development
  • pypi
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  • tomoscan
    • tomoscan.esrf
      • tomoscan.esrf.edfscan
      • tomoscan.esrf.hdf5scan
      • tomoscan.esrf.identifier
        • tomoscan.esrf.identifier.edfidentifier
        • tomoscan.esrf.identifier.folderidentifier
        • tomoscan.esrf.identifier.hdf5Identifier
        • tomoscan.esrf.identifier.jp2kidentifier
        • tomoscan.esrf.identifier.rawidentifier
        • tomoscan.esrf.identifier.tiffidentifier
        • tomoscan.esrf.identifier.url_utils
      • tomoscan.esrf.mock
      • tomoscan.esrf.scan
        • tomoscan.esrf.scan.edfscan
        • tomoscan.esrf.scan.fluoscan
        • tomoscan.esrf.scan.framereducer
        • tomoscan.esrf.scan.fscan
        • tomoscan.esrf.scan.fscan_scantypes
        • tomoscan.esrf.scan.h5utils
        • tomoscan.esrf.scan.hdf5scan
        • tomoscan.esrf.scan.mock
        • tomoscan.esrf.scan.nxtomoscan
        • tomoscan.esrf.scan.utils
      • tomoscan.esrf.utils
      • tomoscan.esrf.volume
        • tomoscan.esrf.volume.edfvolume
        • tomoscan.esrf.volume.hdf5volume
        • tomoscan.esrf.volume.jp2kvolume
        • tomoscan.esrf.volume.mock
        • tomoscan.esrf.volume.rawvolume
        • tomoscan.esrf.volume.singleframebase
        • tomoscan.esrf.volume.tiffvolume
        • tomoscan.esrf.volume.utils
    • tomoscan.factory
      • tomoscan.factory.Factory
    • tomoscan.framereducer
      • tomoscan.framereducer.framereducerbase
        • tomoscan.framereducer.framereducerbase.FrameReducerBase
      • tomoscan.framereducer.method
        • tomoscan.framereducer.method.ReduceMethod
      • tomoscan.framereducer.reducedframesinfos
        • tomoscan.framereducer.reducedframesinfos.ReducedFramesInfos
      • tomoscan.framereducer.target
        • tomoscan.framereducer.target.REDUCER_TARGET
    • tomoscan.framereducerbase
    • tomoscan.identifier
      • tomoscan.identifier.BaseIdentifier
      • tomoscan.identifier.ScanIdentifier
      • tomoscan.identifier.VolumeIdentifier
    • tomoscan.io
      • tomoscan.io.check_virtual_sources_exist
      • tomoscan.io.get_swmr_mode
    • tomoscan.nexus
      • tomoscan.nexus.paths
        • tomoscan.nexus.paths.nxdetector
        • tomoscan.nexus.paths.nxinstrument
        • tomoscan.nexus.paths.nxmonitor
        • tomoscan.nexus.paths.nxsample
        • tomoscan.nexus.paths.nxsource
        • tomoscan.nexus.paths.nxtomo
        • tomoscan.nexus.paths.nxtransformations
      • tomoscan.nexus.utils
    • tomoscan.normalization
      • tomoscan.normalization.calculationmode
        • tomoscan.normalization.calculationmode.CalculationMode
      • tomoscan.normalization.datasetscope
        • tomoscan.normalization.datasetscope.DatasetScope
      • tomoscan.normalization.method
        • tomoscan.normalization.method.Method
      • tomoscan.normalization.methodmode
        • tomoscan.normalization.methodmode.MethodMode
      • tomoscan.normalization.normalization
        • tomoscan.normalization.normalization.normalize_chebyshev_2D
        • tomoscan.normalization.normalization.normalize_lsqr_spline_2D
        • tomoscan.normalization.normalization.IntensityNormalization
    • tomoscan.progress
      • tomoscan.progress.Progress
    • tomoscan.scanbase
      • tomoscan.scanbase.projection_angular_range_to_indices
      • tomoscan.scanbase.projections_angles_to_indices
      • tomoscan.scanbase.TomoScanBase
    • tomoscan.scanfactory
    • tomoscan.serie
    • tomoscan.series
      • tomoscan.series.check_serie_is_consistant_frm_sample_name
      • tomoscan.series.check_series_is_consistent_frm_sample_name
      • tomoscan.series.sequences_to_series_from_sample_name
      • tomoscan.series.serie_is_complete_from_group_size
      • tomoscan.series.series_is_complete_from_group_size
      • tomoscan.series.Series
    • tomoscan.source
      • tomoscan.source.Source
      • tomoscan.source.SourceType
    • tomoscan.test
    • tomoscan.tests
      • tomoscan.tests.datasets
        • tomoscan.tests.datasets.wget_file
        • tomoscan.tests.datasets.GitlabProject
      • tomoscan.tests.test_drac_utils
        • tomoscan.tests.test_drac_utils.compare_keys
        • tomoscan.tests.test_drac_utils.test_nabu_and_drac_compatibility
      • tomoscan.tests.test_io
        • tomoscan.tests.test_io.test_vds
      • tomoscan.tests.test_progress
        • tomoscan.tests.test_progress.test_advancement
        • tomoscan.tests.test_progress.test_progress
      • tomoscan.tests.test_version
        • tomoscan.tests.test_version.test_version
      • tomoscan.tests.utils
        • tomoscan.tests.utils.MockContext
        • tomoscan.tests.utils.NXtomoMockContext
    • tomoscan.tomoobject
      • tomoscan.tomoobject.TomoObject
    • tomoscan.unitsystem
      • tomoscan.unitsystem.ElectricCurrentSystem
      • tomoscan.unitsystem.EnergySI
      • tomoscan.unitsystem.MetricSystem
      • tomoscan.unitsystem.TimeSystem
      • tomoscan.unitsystem.Unit
      • tomoscan.unitsystem.electriccurrentsystem
      • tomoscan.unitsystem.energysystem
      • tomoscan.unitsystem.metricsystem
      • tomoscan.unitsystem.timesystem
      • tomoscan.unitsystem.unit
      • tomoscan.unitsystem.voltagesystem
    • tomoscan.utils
      • tomoscan.utils.decorator
        • tomoscan.utils.decorator.docstring
      • tomoscan.utils.drac
        • tomoscan.utils.drac.mapper
        • tomoscan.utils.drac.recons_vol_mapping
      • tomoscan.utils.geometry
        • tomoscan.utils.geometry.get_subvolume_shape
        • tomoscan.utils.geometry.BoundingBox1D
        • tomoscan.utils.geometry.BoundingBox3D
      • tomoscan.utils.hdf5
        • tomoscan.utils.hdf5.get_data_sources
        • tomoscan.utils.hdf5.DatasetReader
      • tomoscan.utils.io
        • tomoscan.utils.io.deprecated
        • tomoscan.utils.io.deprecated_warning
        • tomoscan.utils.io.filter_esrf_mounting_points
      • tomoscan.utils.volume
        • tomoscan.utils.volume.concatenate
        • tomoscan.utils.volume.rescale_data
        • tomoscan.utils.volume.update_metadata
    • tomoscan.validator
      • tomoscan.validator.is_valid_for_reconstruction
      • tomoscan.validator.BasicScanValidator
      • tomoscan.validator.DarkDatasetValidator
      • tomoscan.validator.DarkEntryValidator
      • tomoscan.validator.DistanceValidator
      • tomoscan.validator.EnergyValidator
      • tomoscan.validator.FlatDatasetValidator
      • tomoscan.validator.FlatEntryValidator
      • tomoscan.validator.PixelValidator
      • tomoscan.validator.ProjectionDatasetValidator
      • tomoscan.validator.ProjectionEntryValidator
      • tomoscan.validator.ReconstructionValidator
      • tomoscan.validator.ValidatorBase
    • tomoscan.version
      • tomoscan.version.calc_hexversion
    • tomoscan.volumebase
      • tomoscan.volumebase.SliceTuple
      • tomoscan.volumebase.VolumeBase
  • API Reference
  • tomoscan.utils
  • tomoscan.uti...

tomoscan.utils.geometry#

Functions

get_subvolume_shape(chunk, volume_shape)

Get the shape of a sub-volume to extract in a volume.

Classes

BoundingBox1D(v1, v2)

BoundingBox3D(v1, v2)

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tomoscan.utils.drac.recons_vol_mapping.UnitConversion

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tomoscan.utils.geometry.get_subvolume_shape
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