tomwer Slice-Stack#

Purpose#

The tomwer slice-stack command is provided to view a set of ‘single-slice’ volumes.

  • The user can provide a list of single-slice volumes to be displayed directly.

  • Alternatively, the user can provide a set of scans. In this case, the application will attempt to deduce reconstructed slices from existing paths at specific locations (e.g., reconstructed_slices, RAW_DATA, PROCESSED_DATA) and display what is relevant. This approach is more uncertain than the previous one.

Warning

At the moment, the application only handles ‘single’ slice volumes.

Note

All volumes generated by nabu are compatible with this viewer.

../_images/slicestackwidget.png

Demo#

Usage#

tomwer slice-stack [-h] [--use-opengl-plot] [--debug] [volume_paths ...]

Options#

positional arguments:
  volume_paths       Volumes to be added to the slice stack visualization. Warning: volumes should be single-slice volumes.

options:
  -h, --help         Show this help message and exit.
  --use-opengl-plot  Use OpenGL for plots (instead of matplotlib).
  --debug            Set the logging system to debug mode.

Examples of Usage#

tomwer slice-stack *.hdf5