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  • Tutorials
  • User Guide
  • API Reference
  • Canvas
  • Development
    • Other Applications
  • youtube
  • pypi
  • gitlab

Section Navigation

  • tomwer
    • tomwer.app
      • tomwer.app.axis
        • tomwer.app.axis.getinputinfo
        • tomwer.app.axis.main
        • tomwer.app.axis.sigintHandler
      • tomwer.app.canvas
        • tomwer.app.canvas.check_free_space
        • tomwer.app.canvas.main
        • tomwer.app.canvas.print_versions
      • tomwer.app.canvas_launcher
        • tomwer.app.canvas_launcher.config
        • tomwer.app.canvas_launcher.environ
        • tomwer.app.canvas_launcher.mainwindow
        • tomwer.app.canvas_launcher.splash
        • tomwer.app.canvas_launcher.utils
        • tomwer.app.canvas_launcher.widgetsscheme
      • tomwer.app.diffframe
        • tomwer.app.diffframe.getinputinfo
        • tomwer.app.diffframe.main
        • tomwer.app.diffframe.sigintHandler
      • tomwer.app.imagekeyeditor
        • tomwer.app.imagekeyeditor.getinputinfo
        • tomwer.app.imagekeyeditor.main
        • tomwer.app.imagekeyeditor.sigintHandler
        • tomwer.app.imagekeyeditor.ImageKeyDialog
      • tomwer.app.imagekeyupgrader
        • tomwer.app.imagekeyupgrader.getinputinfo
        • tomwer.app.imagekeyupgrader.main
        • tomwer.app.imagekeyupgrader.sigintHandler
        • tomwer.app.imagekeyupgrader.ImageKeyUpgraderDialog
      • tomwer.app.intensitynormalization
        • tomwer.app.intensitynormalization.getinputinfo
        • tomwer.app.intensitynormalization.main
        • tomwer.app.intensitynormalization.sigintHandler
        • tomwer.app.intensitynormalization.IntensityNormalizationThread
        • tomwer.app.intensitynormalization.NormIntensityWindow
      • tomwer.app.multicor
        • tomwer.app.multicor.getinputinfo
        • tomwer.app.multicor.main
        • tomwer.app.multicor.sigintHandler
        • tomwer.app.multicor.SAAxisThread
        • tomwer.app.multicor.SAAxisWindow
      • tomwer.app.multipag
        • tomwer.app.multipag.getinputinfo
        • tomwer.app.multipag.main
        • tomwer.app.multipag.sigintHandler
        • tomwer.app.multipag.SADeltaBetaThread
        • tomwer.app.multipag.SADeltaBetaWindow
      • tomwer.app.nabuapp
        • tomwer.app.nabuapp.getinputinfo
        • tomwer.app.nabuapp.main
        • tomwer.app.nabuapp.sigintHandler
        • tomwer.app.nabuapp.DataViewer
        • tomwer.app.nabuapp.NabuProcessingThread
        • tomwer.app.nabuapp.NabuWindow
      • tomwer.app.nxtomoeditor
        • tomwer.app.nxtomoeditor.getinputinfo
        • tomwer.app.nxtomoeditor.main
        • tomwer.app.nxtomoeditor.sigintHandler
        • tomwer.app.nxtomoeditor.NXtomoEditorDialog
      • tomwer.app.patchrawdarkflat
        • tomwer.app.patchrawdarkflat.getinputinfo
        • tomwer.app.patchrawdarkflat.main
        • tomwer.app.patchrawdarkflat.sigintHandler
      • tomwer.app.radiostack
        • tomwer.app.radiostack.addFolderAndSubFolder
        • tomwer.app.radiostack.getinputinfo
        • tomwer.app.radiostack.main
        • tomwer.app.radiostack.sigintHandler
      • tomwer.app.reducedarkflat
        • tomwer.app.reducedarkflat.getinputinfo
        • tomwer.app.reducedarkflat.main
      • tomwer.app.rsync
        • tomwer.app.rsync.getinputinfo
        • tomwer.app.rsync.main
      • tomwer.app.samplemoved
        • tomwer.app.samplemoved.getinputinfo
        • tomwer.app.samplemoved.main
        • tomwer.app.samplemoved.sigintHandler
      • tomwer.app.scanviewer
        • tomwer.app.scanviewer.getinputinfo
        • tomwer.app.scanviewer.main
        • tomwer.app.scanviewer.sigintHandler
      • tomwer.app.sinogramviewer
        • tomwer.app.sinogramviewer.getinputinfo
        • tomwer.app.sinogramviewer.main
        • tomwer.app.sinogramviewer.sigintHandler
        • tomwer.app.sinogramviewer.SinogramViewer
      • tomwer.app.slicestack
        • tomwer.app.slicestack.getinputinfo
        • tomwer.app.slicestack.main
        • tomwer.app.slicestack.sigintHandler
      • tomwer.app.stitching
        • tomwer.app.stitching.common
      • tomwer.app.stopdatalistener
        • tomwer.app.stopdatalistener.getinputinfo
        • tomwer.app.stopdatalistener.main
      • tomwer.app.ystitching
        • tomwer.app.ystitching.getinputinfo
        • tomwer.app.ystitching.main
      • tomwer.app.zstitching
        • tomwer.app.zstitching.getinputinfo
        • tomwer.app.zstitching.main
    • tomwer.core
      • tomwer.core.cluster
        • tomwer.core.cluster.cluster
      • tomwer.core.futureobject
        • tomwer.core.futureobject.FutureTomwerObject
      • tomwer.core.log
        • tomwer.core.log.processlog
      • tomwer.core.process
        • tomwer.core.process.cluster
        • tomwer.core.process.conditions
        • tomwer.core.process.control
        • tomwer.core.process.drac
        • tomwer.core.process.edit
        • tomwer.core.process.output
        • tomwer.core.process.reconstruction
        • tomwer.core.process.script
        • tomwer.core.process.stitching
        • tomwer.core.process.task
        • tomwer.core.process.tests
        • tomwer.core.process.utils
        • tomwer.core.process.visualization
      • tomwer.core.scan
        • tomwer.core.scan.blissscan
        • tomwer.core.scan.edfscan
        • tomwer.core.scan.futurescan
        • tomwer.core.scan.hdf5scan
        • tomwer.core.scan.helicalmetadata
        • tomwer.core.scan.nxtomoscan
        • tomwer.core.scan.scanbase
        • tomwer.core.scan.scanfactory
        • tomwer.core.scan.scantype
        • tomwer.core.scan.tests
      • tomwer.core.settings
        • tomwer.core.settings.MAX_MEM_USED
        • tomwer.core.settings.MAKE_OAR_PYST2_PATH
        • tomwer.core.settings.JSON_RPC_HOST
        • tomwer.core.settings.get_dest_path
        • tomwer.core.settings.get_lbsram_path
        • tomwer.core.settings.isOnLbsram
        • tomwer.core.settings.mock_lsbram
        • tomwer.core.settings.DefaultSlurmSettingsCastVolume
        • tomwer.core.settings.DefaultSlurmSettingsSliceReconstruction
        • tomwer.core.settings.DefaultSlurmSettingsStitching
        • tomwer.core.settings.DefaultSlurmSettingsVolumeReconstruction
        • tomwer.core.settings.SlurmSettings
        • tomwer.core.settings.SlurmSettingsMode
      • tomwer.core.signal
        • tomwer.core.signal.Signal
      • tomwer.core.tests
        • tomwer.core.tests.test_scanutils
        • tomwer.core.tests.test_utils
      • tomwer.core.tomwer_object
        • tomwer.core.tomwer_object.TomwerObject
      • tomwer.core.utils
        • tomwer.core.utils.Singleton
        • tomwer.core.utils.char
        • tomwer.core.utils.deprecation
        • tomwer.core.utils.dictutils
        • tomwer.core.utils.ftseriesutils
        • tomwer.core.utils.gpu
        • tomwer.core.utils.image
        • tomwer.core.utils.lbsram
        • tomwer.core.utils.locker
        • tomwer.core.utils.logconfig
        • tomwer.core.utils.normalization
        • tomwer.core.utils.nxtomoutils
        • tomwer.core.utils.resource
        • tomwer.core.utils.scanutils
        • tomwer.core.utils.slurm
        • tomwer.core.utils.spec
        • tomwer.core.utils.tests
        • tomwer.core.utils.threads
        • tomwer.core.utils.time
        • tomwer.core.utils.volumeutils
      • tomwer.core.volume
        • tomwer.core.volume.edfvolume
        • tomwer.core.volume.hdf5volume
        • tomwer.core.volume.jp2kvolume
        • tomwer.core.volume.rawvolume
        • tomwer.core.volume.tiffvolume
        • tomwer.core.volume.volumebase
        • tomwer.core.volume.volumefactory
    • tomwer.gui
      • tomwer.gui.cluster
        • tomwer.gui.cluster.slurm
        • tomwer.gui.cluster.supervisor
        • tomwer.gui.cluster.tests
      • tomwer.gui.conditions
        • tomwer.gui.conditions.filter
      • tomwer.gui.configuration
        • tomwer.gui.configuration.action
        • tomwer.gui.configuration.level
      • tomwer.gui.control
        • tomwer.gui.control.actions
        • tomwer.gui.control.datadiscovery
        • tomwer.gui.control.datalist
        • tomwer.gui.control.datalistener
        • tomwer.gui.control.datareacheractions
        • tomwer.gui.control.datatransfert
        • tomwer.gui.control.datavalidator
        • tomwer.gui.control.datawatcher
        • tomwer.gui.control.history
        • tomwer.gui.control.nxtomomill
        • tomwer.gui.control.observations
        • tomwer.gui.control.reducedarkflatselector
        • tomwer.gui.control.scanselectorwidget
        • tomwer.gui.control.selectorwidgetbase
        • tomwer.gui.control.series
        • tomwer.gui.control.singletomoobj
        • tomwer.gui.control.tests
        • tomwer.gui.control.tomoobjdisplaymode
        • tomwer.gui.control.volumeselectorwidget
      • tomwer.gui.dataportal
        • tomwer.gui.dataportal.createscreenshots
        • tomwer.gui.dataportal.gallery
        • tomwer.gui.dataportal.outputformat
        • tomwer.gui.dataportal.publish
      • tomwer.gui.debugtools
        • tomwer.gui.debugtools.datasetgenerator
        • tomwer.gui.debugtools.objectinspector
      • tomwer.gui.dialog
        • tomwer.gui.dialog.QDataDialog
        • tomwer.gui.dialog.QVolumeDialog
      • tomwer.gui.edit
        • tomwer.gui.edit.dkrfpatch
        • tomwer.gui.edit.imagekeyeditor
        • tomwer.gui.edit.nxtomoeditor
        • tomwer.gui.edit.nxtomowarmer
        • tomwer.gui.edit.tests
      • tomwer.gui.icons
        • tomwer.gui.icons.getAnimatedIcon
        • tomwer.gui.icons.getQFile
        • tomwer.gui.icons.getQIcon
        • tomwer.gui.icons.getQPixmap
        • tomwer.gui.icons.getWaitIcon
        • tomwer.gui.icons.AbstractAnimatedIcon
        • tomwer.gui.icons.AnimatedIcon
        • tomwer.gui.icons.MovieAnimatedIcon
        • tomwer.gui.icons.MultiImageAnimatedIcon
      • tomwer.gui.illustrations
        • tomwer.gui.illustrations.getQFile
        • tomwer.gui.illustrations.getQIcon
        • tomwer.gui.illustrations.getQPixmap
        • tomwer.gui.illustrations.getResourceFileName
      • tomwer.gui.imagefromfile
        • tomwer.gui.imagefromfile.FileWithImage
        • tomwer.gui.imagefromfile.ImageFromFile
      • tomwer.gui.metadataloader
        • tomwer.gui.metadataloader.VolumeMetadataLoader
      • tomwer.gui.qconfigfile
        • tomwer.gui.qconfigfile.QConfigFileDialog
      • tomwer.gui.qlefilesystem
        • tomwer.gui.qlefilesystem.QLFileSystem
      • tomwer.gui.reconstruction
        • tomwer.gui.reconstruction.axis
        • tomwer.gui.reconstruction.darkref
        • tomwer.gui.reconstruction.nabu
        • tomwer.gui.reconstruction.normalization
        • tomwer.gui.reconstruction.saaxis
        • tomwer.gui.reconstruction.sadeltabeta
        • tomwer.gui.reconstruction.scores
        • tomwer.gui.reconstruction.tests
      • tomwer.gui.samplemoved
        • tomwer.gui.samplemoved.SampleMovedWidget
        • tomwer.gui.samplemoved.selectiontable
      • tomwer.gui.settings
        • tomwer.gui.settings.Y_AXIS_DOWNWARD
        • tomwer.gui.settings.EDITING_BACKGROUND_COLOR
      • tomwer.gui.stackplot
        • tomwer.gui.stackplot.QImageFileStackPlot
      • tomwer.gui.stacks
        • tomwer.gui.stacks.RadioStack
        • tomwer.gui.stacks.SliceStack
      • tomwer.gui.stitching
        • tomwer.gui.stitching.SingleAxisStitchingWidget
        • tomwer.gui.stitching.StitchingOptionsWidget
        • tomwer.gui.stitching.StitchingWindow
        • tomwer.gui.stitching.action
        • tomwer.gui.stitching.alignment
        • tomwer.gui.stitching.axisorderedlist
        • tomwer.gui.stitching.config
        • tomwer.gui.stitching.metadataholder
        • tomwer.gui.stitching.normalization
        • tomwer.gui.stitching.preview
        • tomwer.gui.stitching.singleaxis
        • tomwer.gui.stitching.stitchandbackground
        • tomwer.gui.stitching.stitching_preview
        • tomwer.gui.stitching.stitching_raw
        • tomwer.gui.stitching.utils
        • tomwer.gui.stitching.z_stitching
      • tomwer.gui.tests
        • tomwer.gui.tests.test_axis_gui
        • tomwer.gui.tests.test_qfolder_dialog
      • tomwer.gui.utils
        • tomwer.gui.utils.RangeWidget
        • tomwer.gui.utils.buttons
        • tomwer.gui.utils.completer
        • tomwer.gui.utils.flow
        • tomwer.gui.utils.gpu
        • tomwer.gui.utils.illustrations
        • tomwer.gui.utils.inputwidget
        • tomwer.gui.utils.lineselector
        • tomwer.gui.utils.loadingmode
        • tomwer.gui.utils.qt_utils
        • tomwer.gui.utils.sandboxes
        • tomwer.gui.utils.scandescription
        • tomwer.gui.utils.scrollarea
        • tomwer.gui.utils.slider
        • tomwer.gui.utils.splashscreen
        • tomwer.gui.utils.step
        • tomwer.gui.utils.unitsystem
        • tomwer.gui.utils.utils
        • tomwer.gui.utils.vignettes
        • tomwer.gui.utils.waiterthread
      • tomwer.gui.visualization
        • tomwer.gui.visualization.dataviewer
        • tomwer.gui.visualization.diffviewer
        • tomwer.gui.visualization.fullscreenplot
        • tomwer.gui.visualization.imagestack
        • tomwer.gui.visualization.nxtomometadata
        • tomwer.gui.visualization.reconstructionparameters
        • tomwer.gui.visualization.scanoverview
        • tomwer.gui.visualization.sinogramviewer
        • tomwer.gui.visualization.test
        • tomwer.gui.visualization.tomoobjoverview
        • tomwer.gui.visualization.volumeoverview
        • tomwer.gui.visualization.volumeviewer
    • tomwer.io
      • tomwer.io.utils
        • tomwer.io.utils.h5pyutils
        • tomwer.io.utils.raw_and_processed_data
        • tomwer.io.utils.tomoobj
        • tomwer.io.utils.utils
    • tomwer.resources
    • tomwer.synctools
      • tomwer.synctools.axis
        • tomwer.synctools.axis.QAxisRP
      • tomwer.synctools.darkref
        • tomwer.synctools.darkref.QDKRFRP
      • tomwer.synctools.datalistener
        • tomwer.synctools.datalistener.DataListenerQThread
        • tomwer.synctools.datalistener.MockDataListenerQThread
      • tomwer.synctools.datatransfert
        • tomwer.synctools.datatransfert.ScanTransfer
      • tomwer.synctools.imageloaderthread
        • tomwer.synctools.imageloaderthread.ImageLoaderThread
      • tomwer.synctools.rsyncmanager
        • tomwer.synctools.rsyncmanager.BlissSequenceRSyncWorker
        • tomwer.synctools.rsyncmanager.BlissSequenceRSyncWorkerFinalizer
        • tomwer.synctools.rsyncmanager.RSyncWorker
      • tomwer.synctools.saaxis
        • tomwer.synctools.saaxis.QSAAxisParams
      • tomwer.synctools.sadeltabeta
        • tomwer.synctools.sadeltabeta.QSADeltaBetaParams
      • tomwer.synctools.stacks
        • tomwer.synctools.stacks.control
        • tomwer.synctools.stacks.processingstack
        • tomwer.synctools.stacks.reconstruction
      • tomwer.synctools.tests
        • tomwer.synctools.tests.test_darkRefs
        • tomwer.synctools.tests.test_foldertransfer
      • tomwer.synctools.utils
        • tomwer.synctools.utils.scanstages
    • tomwer.tests
      • tomwer.tests.conftest
        • tomwer.tests.conftest.collect_garbage
        • tomwer.tests.conftest.create_default_scan
        • tomwer.tests.conftest.global_cleanup_orange
        • tomwer.tests.conftest.global_cleanup_pytest
        • tomwer.tests.conftest.nxtomo_scan_180
        • tomwer.tests.conftest.nxtomo_scan_360
        • tomwer.tests.conftest.qtapp
        • tomwer.tests.conftest.warn_qtwidgets_alive
      • tomwer.tests.datasets
      • tomwer.tests.test_scripts
        • tomwer.tests.test_scripts.ScriptTest
        • tomwer.tests.test_scripts.TestScriptsHelp
      • tomwer.tests.test_utils
        • tomwer.tests.test_utils.test_launcher
      • tomwer.tests.utils
        • tomwer.tests.utils.skip_gui_test
    • tomwer.utils
      • tomwer.utils.docstring
      • tomwer.utils.Launcher
      • tomwer.utils.LauncherCommand
    • tomwer.version
      • tomwer.version.calc_hexversion
  • orangecontrib
    • orangecontrib.ewoksdemo
      • orangecontrib.ewoksdemo.icons
      • orangecontrib.ewoksdemo.sumtask
        • orangecontrib.ewoksdemo.sumtask.OWSumTask
      • orangecontrib.ewoksdemo.tutorials
    • orangecontrib.ewoksnotify
      • orangecontrib.ewoksnotify.ToneNotifierOW
        • orangecontrib.ewoksnotify.ToneNotifierOW.NotificationMessage
        • orangecontrib.ewoksnotify.ToneNotifierOW.ToneNotifierOW
      • orangecontrib.ewoksnotify.WaiterOW
        • orangecontrib.ewoksnotify.WaiterOW.WaiterOW
      • orangecontrib.ewoksnotify.icons
    • orangecontrib.ewoksnowidget
      • orangecontrib.ewoksnowidget.default_owwidget_class
      • orangecontrib.ewoksnowidget.register_owwidget
      • orangecontrib.ewoksnowidget.widget_discovery
      • orangecontrib.ewoksnowidget.icons
      • orangecontrib.ewoksnowidget.widgets
    • orangecontrib.ewokstest
      • orangecontrib.ewokstest.enable_ewokstest_category
      • orangecontrib.ewokstest.is_ewokstest_category_enabled
      • orangecontrib.ewokstest.widget_discovery
      • orangecontrib.ewokstest.icons
      • orangecontrib.ewokstest.listgenerator
        • orangecontrib.ewokstest.listgenerator.ListGenerator
      • orangecontrib.ewokstest.print_sum
        • orangecontrib.ewokstest.print_sum.PrintSumOW
      • orangecontrib.ewokstest.sumlist_one_thread
        • orangecontrib.ewokstest.sumlist_one_thread.SumListOneThread
      • orangecontrib.ewokstest.sumlist_parameter_form
        • orangecontrib.ewokstest.sumlist_parameter_form.OWSumList
      • orangecontrib.ewokstest.sumlist_several_thread
        • orangecontrib.ewokstest.sumlist_several_thread.SumListSeveralThread
      • orangecontrib.ewokstest.sumlist_stack
        • orangecontrib.ewokstest.sumlist_stack.SumListWithTaskStack
      • orangecontrib.ewokstest.sumtask
        • orangecontrib.ewokstest.sumtask.OWSumTaskTest
    • orangecontrib.tomwer
      • orangecontrib.tomwer.orange
        • orangecontrib.tomwer.orange.managedprocess
        • orangecontrib.tomwer.orange.settings
      • orangecontrib.tomwer.state_summary
        • orangecontrib.tomwer.state_summary.summarize_
      • orangecontrib.tomwer.tests
        • orangecontrib.tomwer.tests.TestAcquisition
      • orangecontrib.tomwer.tutorials
        • orangecontrib.tomwer.tutorials.id16b
      • orangecontrib.tomwer.widgets
        • orangecontrib.tomwer.widgets.widget_discovery
        • orangecontrib.tomwer.widgets.cluster
        • orangecontrib.tomwer.widgets.control
        • orangecontrib.tomwer.widgets.dataportal
        • orangecontrib.tomwer.widgets.debugtools
        • orangecontrib.tomwer.widgets.edit
        • orangecontrib.tomwer.widgets.other
        • orangecontrib.tomwer.widgets.reconstruction
        • orangecontrib.tomwer.widgets.stitching
        • orangecontrib.tomwer.widgets.tests
        • orangecontrib.tomwer.widgets.utils
        • orangecontrib.tomwer.widgets.visualization
  • API Reference
  • tomwer.core.scan
  • tomwer.core....

tomwer.core.scan.hdf5scan#

Classes

HDF5TomoScan(scan, entry[, index, ...])

HDF5TomoScanIdentifier([metadata])

previous

tomwer.core.scan.futurescan

next

tomwer.core.scan.hdf5scan.HDF5TomoScan

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