{ "cells": [ { "attachments": {}, "cell_type": "markdown", "metadata": {}, "source": [ "# Read data from an NXtomo\n", "\n", "\n", "Warning: The HDF5 managed by tomoscan should be NXTomo compliant. So if your files come directly from bliss you should first convert them using [nxtomomill](https://gitlab.esrf.fr/tomotools/nxtomomill). See (tomoh52nx tutorial)[https://tomotools.gitlab-pages.esrf.fr/nxtomomill/tutorials/tomoh52nx.html>]" ] }, { "cell_type": "code", "execution_count": 7, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "Using matplotlib backend: Qt5Agg\n", "Populating the interactive namespace from numpy and matplotlib\n" ] } ], "source": [ "# %pylab to use imshow uncomment" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## Get a simple dataset for test (this dataset is a pure noise)\n", "\n", "Warning: this dataset contains pure noise." ] }, { "cell_type": "code", "execution_count": 2, "metadata": {}, "outputs": [], "source": [ "from tomoscan.tests.datasets import GitlabDataset\n", "import tempfile\n", "import shutil\n", "import os\n", "\n", "scan_file = GitlabDataset.get_dataset(\"h5_datasets/frm_edftomomill_twoentries.nx\")" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## create an instance of `HDF5TomoScan`\n", "\n", "`HDF5TomoScan` implements the TomoScanBase interface.\n", "This allow you to have a common API for accessing data from EDF or HDF5 regardless of the type of acquisition.\n", "\n", "\n", "For HDF5 you have to provide the file you want to tread (.hdf5, .h5, .nx...) and an entry as HDF5 files can contains several acquisition." ] }, { "cell_type": "code", "execution_count": 4, "metadata": {}, "outputs": [], "source": [ "from tomoscan.esrf.scan.nxtomoscan import NXtomoScan\n", "scan = NXtomoScan(scan=scan_file, entry='entry0000')" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "Then from it you can access several information" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "### projections" ] }, { "cell_type": "code", "execution_count": 5, "metadata": {}, "outputs": [ { "data": { "text/plain": [ "{22: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=22),\n", " 23: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=23),\n", " 24: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=24),\n", " 25: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=25),\n", " 26: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=26),\n", " 27: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=27),\n", " 28: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=28),\n", " 29: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=29),\n", " 30: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=30),\n", " 31: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=31),\n", " 32: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=32),\n", " 33: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=33),\n", " 34: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=34),\n", " 35: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=35),\n", " 36: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=36),\n", " 37: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=37),\n", " 38: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=38),\n", " 39: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=39),\n", " 40: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=40),\n", " 41: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=41),\n", " 42: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=42),\n", " 43: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=43),\n", " 44: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=44),\n", " 45: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=45),\n", " 46: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=46),\n", " 47: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=47),\n", " 48: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=48),\n", " 49: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=49),\n", " 50: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=50),\n", " 51: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=51),\n", " 52: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=52),\n", " 53: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=53),\n", " 54: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=54),\n", " 55: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=55),\n", " 56: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=56),\n", " 57: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=57),\n", " 58: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=58),\n", " 59: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=59),\n", " 60: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=60),\n", " 61: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=61),\n", " 62: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=62),\n", " 63: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=63),\n", " 64: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=64),\n", " 65: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=65),\n", " 66: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=66),\n", " 67: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=67),\n", " 68: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=68),\n", " 69: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=69),\n", " 70: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=70),\n", " 71: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=71),\n", " 72: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=72),\n", " 73: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=73),\n", " 74: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=74),\n", " 75: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=75),\n", " 76: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=76),\n", " 77: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=77),\n", " 78: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=78),\n", " 79: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=79),\n", " 80: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=80),\n", " 81: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=81),\n", " 82: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=82),\n", " 83: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=83),\n", " 84: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=84),\n", " 85: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=85),\n", " 86: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=86),\n", " 87: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=87),\n", " 88: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=88),\n", " 89: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=89),\n", " 90: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=90),\n", " 91: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=91),\n", " 92: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=92),\n", " 93: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=93),\n", " 94: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=94),\n", " 95: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=95),\n", " 96: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=96),\n", " 97: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=97),\n", " 98: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=98),\n", " 99: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=99),\n", " 100: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=100),\n", " 101: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=101),\n", " 102: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=102),\n", " 103: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=103),\n", " 104: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=104),\n", " 105: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=105),\n", " 106: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=106),\n", " 107: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=107),\n", " 108: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=108),\n", " 109: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=109),\n", " 110: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=110),\n", " 111: DataUrl(valid=True, scheme='silx', 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file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=957),\n", " 958: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=958),\n", " 959: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=959),\n", " 960: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=960),\n", " 961: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=961),\n", " 962: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=962),\n", " 963: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=963),\n", " 964: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=964),\n", " 965: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=965),\n", " 966: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=966),\n", " 967: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=967),\n", " 968: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=968),\n", " 969: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=969),\n", " 970: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=970),\n", " 971: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=971),\n", " 972: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=972),\n", " 973: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=973),\n", " 974: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=974),\n", " 975: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=975),\n", " 976: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=976),\n", " 977: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=977),\n", " 978: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=978),\n", " 979: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=979),\n", " 980: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=980),\n", " 981: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=981),\n", " 982: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=982),\n", " 983: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=983),\n", " 984: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=984),\n", " 985: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=985),\n", " 986: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=986),\n", " 987: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=987),\n", " 988: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=988),\n", " 989: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=989),\n", " 990: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=990),\n", " 991: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=991),\n", " 992: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=992),\n", " 993: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=993),\n", " 994: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=994),\n", " 995: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=995),\n", " 996: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=996),\n", " 997: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=997),\n", " 998: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=998),\n", " 999: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=999),\n", " 1000: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=1000),\n", " 1001: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=1001),\n", " 1002: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=1002),\n", " 1003: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=1003),\n", " 1004: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=1004),\n", " 1005: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=1005),\n", " 1006: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=1006),\n", " 1007: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=1007),\n", " 1008: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=1008),\n", " 1009: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=1009),\n", " 1010: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=1010),\n", " 1011: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=1011),\n", " 1012: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=1012),\n", " 1013: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=1013),\n", " 1014: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=1014),\n", " 1015: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=1015),\n", " 1016: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=1016),\n", " 1017: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=1017),\n", " 1018: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=1018),\n", " 1019: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=1019),\n", " 1020: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=1020),\n", " 1021: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=1021),\n", " ...}" ] }, "execution_count": 5, "metadata": {}, "output_type": "execute_result" } ], "source": [ "print(\"get\", len(scan.projections), \"projections\")\n", "# display the first element of 'projections'\n", "next(iter(scan.projections))" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "This return a dictionary of projection index and DataUrl.\n", "You can access the data using `silx.io.utils.get_data function`" ] }, { "cell_type": "code", "execution_count": 9, "metadata": {}, "outputs": [ { "data": { "text/plain": [ "" ] }, "execution_count": 9, "metadata": {}, "output_type": "execute_result" } ], "source": [ "from silx.io.utils import get_data\n", "frame_28_data = get_data(scan.projections[28])\n", "#imshow(frame_28_data)" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "### darks" ] }, { "cell_type": "code", "execution_count": 10, "metadata": {}, "outputs": [ { "data": { "text/plain": [ "{0: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=0)}" ] }, "execution_count": 10, "metadata": {}, "output_type": "execute_result" } ], "source": [ "scan.darks" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "### flats" ] }, { "cell_type": "code", "execution_count": 11, "metadata": {}, "outputs": [ { "data": { "text/plain": [ "{1: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=1),\n", " 2: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=2),\n", " 3: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=3),\n", " 4: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=4),\n", " 5: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=5),\n", " 6: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=6),\n", " 7: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=7),\n", " 8: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=8),\n", " 9: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=9),\n", " 10: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=10),\n", " 11: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=11),\n", " 12: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=12),\n", " 13: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=13),\n", " 14: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=14),\n", " 15: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=15),\n", " 16: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=16),\n", " 17: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=17),\n", " 18: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=18),\n", " 19: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=19),\n", " 20: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=20),\n", " 21: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=21),\n", " 1521: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=1521),\n", " 1522: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=1522),\n", " 1523: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=1523),\n", " 1524: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=1524),\n", " 1525: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=1525),\n", " 1526: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=1526),\n", " 1527: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=1527),\n", " 1528: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=1528),\n", " 1529: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=1529),\n", " 1530: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=1530),\n", " 1531: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=1531),\n", " 1532: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=1532),\n", " 1533: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=1533),\n", " 1534: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=1534),\n", " 1535: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=1535),\n", " 1536: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=1536),\n", " 1537: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=1537),\n", " 1538: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=1538),\n", " 1539: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=1539),\n", " 1540: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=1540),\n", " 1541: DataUrl(valid=True, scheme='silx', file_path='/home/payno/dev/tomo/tomoscan/tomoscan/test/h5_datasets/frm_edftomomill_twoentries.nx', data_path='entry0000/instrument/detector/data', data_slice=1541)}" ] }, "execution_count": 11, "metadata": {}, "output_type": "execute_result" } ], "source": [ "scan.flats" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "### energy (in keV)" ] }, { "cell_type": "code", "execution_count": 12, "metadata": {}, "outputs": [ { "data": { "text/plain": [ "17.05" ] }, "execution_count": 12, "metadata": {}, "output_type": "execute_result" } ], "source": [ "scan.energy" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "### pixel size" ] }, { "cell_type": "code", "execution_count": 13, "metadata": {}, "outputs": [ { "data": { "text/plain": [ "0.005" ] }, "execution_count": 13, "metadata": {}, "output_type": "execute_result" } ], "source": [ "scan.get_pixel_size(unit='cm')" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "There is more information that you can access, to get them all please have a look on the [TomwerScanBase API](https://tomotools.gitlab-pages.esrf.fr/tomoscan/modules/scanbase.html#tomoscan.scanbase.TomoScanBase) and [EDFTomoScan API](https://tomotools.gitlab-pages.esrf.fr/tomoscan/modules/esrf.html#tomoscan.esrf.edfscan.EDFTomoScan)." ] } ], "metadata": { "kernelspec": { "display_name": "Python 3", "language": "python", "name": "python3" }, "language_info": { "codemirror_mode": { "name": "ipython", "version": 3 }, "file_extension": ".py", "mimetype": "text/x-python", "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", "version": "3.7.3" } }, "nbformat": 4, "nbformat_minor": 4 }