Settings

nxtomomill needs to get several information in order to complete translation from EDF or (bliss) HDF5 to nexus-compliant HDF5 file.

This information

• is a set of key values for EDF

• is a set of dataset location and name for (bliss) HDF5

All are stored in nxtomomill.settings.py file. For tomoh52nx you can generally overwrite from calling the appropriate command option (see h52nx tutorial).

But for scripting are when used from a dependency (like tomwer) it can be convenient to modify some of them. For example if you cannot retrieve rotation angle because this information is stored at a different location than the ‘default’ one knows by nxtomomill you can change H5_Y_ROT_KEY parameter.